Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19100 and HSERO_RS19105 are separated by 2 nucleotides HSERO_RS19105 and HSERO_RS19110 are separated by 255 nucleotides
HSERO_RS19100: HSERO_RS19100 - FAD-binding protein, at 4,381,829 to 4,382,908
_RS19100
HSERO_RS19105: HSERO_RS19105 - FAD-binding protein, at 4,382,911 to 4,384,398
_RS19105
HSERO_RS19110: HSERO_RS19110 - LysR family transcriptional regulator, at 4,384,654 to 4,385,544
_RS19110
Position (kb) 4382
4383
4384
4385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4382.042 kb on + strand, within HSERO_RS19100 at 4382.203 kb on - strand, within HSERO_RS19100 at 4382.398 kb on - strand, within HSERO_RS19100 at 4382.550 kb on - strand, within HSERO_RS19100 at 4382.559 kb on + strand, within HSERO_RS19100 at 4382.580 kb on + strand, within HSERO_RS19100 at 4382.580 kb on + strand, within HSERO_RS19100 at 4382.693 kb on - strand, within HSERO_RS19100 at 4382.723 kb on - strand, within HSERO_RS19100 at 4382.788 kb on + strand, within HSERO_RS19100 at 4382.910 kb on + strand at 4383.344 kb on - strand, within HSERO_RS19105 at 4383.353 kb on + strand, within HSERO_RS19105 at 4383.407 kb on + strand, within HSERO_RS19105 at 4383.445 kb on + strand, within HSERO_RS19105 at 4383.535 kb on + strand, within HSERO_RS19105 at 4383.671 kb on + strand, within HSERO_RS19105 at 4383.679 kb on - strand, within HSERO_RS19105 at 4384.029 kb on + strand, within HSERO_RS19105 at 4384.109 kb on - strand, within HSERO_RS19105 at 4384.338 kb on + strand at 4384.391 kb on + strand at 4384.439 kb on - strand at 4384.547 kb on - strand at 4384.677 kb on + strand at 4384.677 kb on + strand at 4384.726 kb on + strand at 4384.777 kb on - strand, within HSERO_RS19110 at 4384.847 kb on - strand, within HSERO_RS19110 at 4384.872 kb on + strand, within HSERO_RS19110 at 4384.905 kb on + strand, within HSERO_RS19110 at 4384.932 kb on + strand, within HSERO_RS19110 at 4384.937 kb on + strand, within HSERO_RS19110 at 4385.028 kb on + strand, within HSERO_RS19110 at 4385.041 kb on - strand, within HSERO_RS19110 at 4385.046 kb on - strand, within HSERO_RS19110 at 4385.125 kb on - strand, within HSERO_RS19110 at 4385.258 kb on + strand, within HSERO_RS19110 at 4385.260 kb on - strand, within HSERO_RS19110 at 4385.323 kb on + strand, within HSERO_RS19110 at 4385.359 kb on - strand, within HSERO_RS19110
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,382,042 + HSERO_RS19100 0.20 -0.4 4,382,203 - HSERO_RS19100 0.35 -0.1 4,382,398 - HSERO_RS19100 0.53 -2.3 4,382,550 - HSERO_RS19100 0.67 +0.1 4,382,559 + HSERO_RS19100 0.68 -0.4 4,382,580 + HSERO_RS19100 0.70 +0.1 4,382,580 + HSERO_RS19100 0.70 -0.7 4,382,693 - HSERO_RS19100 0.80 +0.5 4,382,723 - HSERO_RS19100 0.83 -1.1 4,382,788 + HSERO_RS19100 0.89 +0.1 4,382,910 + +0.1 4,383,344 - HSERO_RS19105 0.29 -0.2 4,383,353 + HSERO_RS19105 0.30 -1.4 4,383,407 + HSERO_RS19105 0.33 -1.3 4,383,445 + HSERO_RS19105 0.36 -1.7 4,383,535 + HSERO_RS19105 0.42 -0.4 4,383,671 + HSERO_RS19105 0.51 -1.8 4,383,679 - HSERO_RS19105 0.52 -0.5 4,384,029 + HSERO_RS19105 0.75 +0.0 4,384,109 - HSERO_RS19105 0.81 -1.1 4,384,338 + -0.8 4,384,391 + -0.6 4,384,439 - -1.1 4,384,547 - +0.0 4,384,677 + +0.1 4,384,677 + +0.7 4,384,726 + +0.5 4,384,777 - HSERO_RS19110 0.14 +1.9 4,384,847 - HSERO_RS19110 0.22 +0.1 4,384,872 + HSERO_RS19110 0.24 +0.5 4,384,905 + HSERO_RS19110 0.28 -0.3 4,384,932 + HSERO_RS19110 0.31 +0.2 4,384,937 + HSERO_RS19110 0.32 -0.1 4,385,028 + HSERO_RS19110 0.42 +0.5 4,385,041 - HSERO_RS19110 0.43 -0.2 4,385,046 - HSERO_RS19110 0.44 +0.8 4,385,125 - HSERO_RS19110 0.53 +0.6 4,385,258 + HSERO_RS19110 0.68 -0.4 4,385,260 - HSERO_RS19110 0.68 -0.0 4,385,323 + HSERO_RS19110 0.75 +0.7 4,385,359 - HSERO_RS19110 0.79 -0.8
Or see this region's nucleotide sequence