Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18115 and HSERO_RS18125 are separated by 961 nucleotides HSERO_RS18125 and HSERO_RS18130 are separated by 36 nucleotides HSERO_RS18130 and HSERO_RS18135 are separated by 61 nucleotides
HSERO_RS18115: HSERO_RS18115 - hypothetical protein, at 4,162,166 to 4,162,468
_RS18115
HSERO_RS18125: HSERO_RS18125 - alkylhydroperoxidase, at 4,163,430 to 4,163,996
_RS18125
HSERO_RS18130: HSERO_RS18130 - nucleoside 2-deoxyribosyltransferase, at 4,164,033 to 4,164,533
_RS18130
HSERO_RS18135: HSERO_RS18135 - acyl-CoA dehydrogenase, at 4,164,595 to 4,167,069
_RS18135
Position (kb) 4163
4164 Strain fitness (log2 ratio) -1
0
1
2 at 4162.443 kb on - strand at 4162.472 kb on - strand at 4162.516 kb on + strand at 4162.596 kb on + strand at 4162.639 kb on - strand at 4162.814 kb on + strand at 4163.046 kb on + strand at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.612 kb on + strand, within HSERO_RS18125 at 4163.677 kb on - strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.725 kb on + strand, within HSERO_RS18125 at 4163.782 kb on - strand at 4163.804 kb on + strand, within HSERO_RS18125 at 4163.845 kb on - strand, within HSERO_RS18125 at 4163.860 kb on - strand, within HSERO_RS18125 at 4164.039 kb on - strand at 4164.088 kb on + strand, within HSERO_RS18130 at 4164.116 kb on + strand, within HSERO_RS18130 at 4164.155 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.159 kb on - strand, within HSERO_RS18130 at 4164.195 kb on + strand, within HSERO_RS18130 at 4164.450 kb on - strand, within HSERO_RS18130 at 4164.468 kb on + strand, within HSERO_RS18130 at 4164.494 kb on + strand at 4164.534 kb on + strand at 4164.579 kb on + strand at 4164.579 kb on + strand at 4164.587 kb on - strand at 4164.818 kb on - strand at 4164.961 kb on - strand, within HSERO_RS18135
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,162,443 - +1.9 4,162,472 - +0.0 4,162,516 + +0.4 4,162,596 + +0.8 4,162,639 - -1.2 4,162,814 + -0.3 4,163,046 + +1.2 4,163,612 + HSERO_RS18125 0.32 -0.4 4,163,612 + HSERO_RS18125 0.32 -0.4 4,163,677 - HSERO_RS18125 0.44 -1.1 4,163,725 + HSERO_RS18125 0.52 +0.6 4,163,725 + HSERO_RS18125 0.52 -1.0 4,163,782 - +1.2 4,163,804 + HSERO_RS18125 0.66 +0.1 4,163,845 - HSERO_RS18125 0.73 +0.5 4,163,860 - HSERO_RS18125 0.76 +0.2 4,164,039 - +0.9 4,164,088 + HSERO_RS18130 0.11 -0.3 4,164,116 + HSERO_RS18130 0.17 -0.1 4,164,155 - HSERO_RS18130 0.24 +0.6 4,164,159 - HSERO_RS18130 0.25 -0.0 4,164,159 - HSERO_RS18130 0.25 +0.5 4,164,195 + HSERO_RS18130 0.32 -0.0 4,164,450 - HSERO_RS18130 0.83 +0.7 4,164,468 + HSERO_RS18130 0.87 +0.2 4,164,494 + +0.3 4,164,534 + -1.2 4,164,579 + -0.3 4,164,579 + +0.4 4,164,587 - -0.1 4,164,818 - -0.5 4,164,961 - HSERO_RS18135 0.15 +1.3
Or see this region's nucleotide sequence