Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12865

Experiment: Glucose (C) and nitrate (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with TAPS
2,902,380	+		PFLU_RS12860	0.22	+0.6
2,902,380	+		PFLU_RS12860	0.22	-0.9
2,902,380	+		PFLU_RS12860	0.22	+2.1
2,902,380	+		PFLU_RS12860	0.22	+0.1
2,902,381	-		PFLU_RS12860	0.22	-1.9
2,902,381	-		PFLU_RS12860	0.22	-0.3
2,902,381	-		PFLU_RS12860	0.22	-0.2
2,902,391	-		PFLU_RS12860	0.23	-0.7
2,902,415	-		PFLU_RS12860	0.26	-0.5
2,902,602	+		PFLU_RS12860	0.44	+0.1
2,902,602	+		PFLU_RS12860	0.44	+0.1
2,902,602	+		PFLU_RS12860	0.44	+1.4
2,902,602	+		PFLU_RS12860	0.44	+0.6
2,902,602	+		PFLU_RS12860	0.44	+1.7
2,902,603	-		PFLU_RS12860	0.44	+0.1
2,902,603	-		PFLU_RS12860	0.44	+1.2
2,902,603	-		PFLU_RS12860	0.44	-0.6
2,902,669	-		PFLU_RS12860	0.50	+1.7
2,902,669	-		PFLU_RS12860	0.50	+0.7
2,902,671	+		PFLU_RS12860	0.51	-0.3
2,902,671	+		PFLU_RS12860	0.51	-0.9
2,902,672	-		PFLU_RS12860	0.51	-0.2
2,902,672	-		PFLU_RS12860	0.51	-0.5
2,902,851	+		PFLU_RS12860	0.68	-0.1
2,902,851	+		PFLU_RS12860	0.68	-0.5
2,902,851	+		PFLU_RS12860	0.68	+1.5
2,902,851	+		PFLU_RS12860	0.68	+0.6
2,902,852	-		PFLU_RS12860	0.68	+0.9
2,902,852	-		PFLU_RS12860	0.68	+1.1
2,902,852	-		PFLU_RS12860	0.68	+0.8
2,902,852	-		PFLU_RS12860	0.68	-0.1
2,902,914	-		PFLU_RS12860	0.74	+0.6
2,902,929	+		PFLU_RS12860	0.76	-0.4
2,902,929	+		PFLU_RS12860	0.76	+0.4
2,902,929	+		PFLU_RS12860	0.76	+0.3
2,902,929	+		PFLU_RS12860	0.76	+0.5
2,902,930	-		PFLU_RS12860	0.76	+1.6
2,902,930	-		PFLU_RS12860	0.76	+1.4
2,902,930	-		PFLU_RS12860	0.76	-1.2
2,902,930	-		PFLU_RS12860	0.76	-0.4
2,902,986	+		PFLU_RS12860	0.81	+0.2
2,903,007	+		PFLU_RS12860	0.83	-0.2
2,903,007	+		PFLU_RS12860	0.83	+0.6
2,903,007	+		PFLU_RS12860	0.83	+0.1
2,903,008	-		PFLU_RS12860	0.84	+0.1
2,903,008	-		PFLU_RS12860	0.84	+1.7
2,903,008	-		PFLU_RS12860	0.84	-0.2
2,903,008	-		PFLU_RS12860	0.84	+0.4
2,903,008	-		PFLU_RS12860	0.84	+0.4
2,903,077	+				-1.0
2,903,167	+				+0.1
2,903,167	+				-0.1
2,903,167	+				+0.5
2,903,168	-				+1.1
2,903,168	-				-1.5
2,903,168	-				-0.5
2,903,168	-				+0.7
2,903,168	-				-1.2
2,903,219	+				+0.4
2,903,219	+				+1.1
2,903,220	-				+0.7
2,903,220	-				-0.2
2,903,220	-				-0.2
2,903,242	+				+0.4
2,903,242	+				-1.2
2,903,242	+				-0.0
2,903,242	+				+2.1
2,903,243	-				+0.3
2,903,262	+				-0.6
2,903,262	+				+0.1
2,903,262	+				+0.8
2,903,262	+				+0.7
2,903,262	+				-2.1
2,903,262	+				-1.6
2,903,263	-				-0.0
2,903,263	-				-0.5
2,903,263	-				+0.8
2,903,268	+				+1.1
2,903,268	+				-0.0
2,903,269	-				+0.2
2,903,318	+		PFLU_RS12865	0.14	+1.1
2,903,318	+		PFLU_RS12865	0.14	+2.1
2,903,451	-		PFLU_RS12865	0.26	-0.6
2,903,498	+		PFLU_RS12865	0.31	+0.4
2,903,499	-		PFLU_RS12865	0.31	+1.1
2,903,499	-		PFLU_RS12865	0.31	-0.1
2,903,499	-		PFLU_RS12865	0.31	-0.3
2,903,499	-		PFLU_RS12865	0.31	-0.5
2,903,499	-		PFLU_RS12865	0.31	-0.5
2,903,509	-		PFLU_RS12865	0.32	-0.3
2,903,603	+		PFLU_RS12865	0.40	-0.2
2,903,604	-		PFLU_RS12865	0.41	-2.0
2,903,604	-		PFLU_RS12865	0.41	+1.1
2,903,677	-		PFLU_RS12865	0.47	+0.1
2,903,677	-		PFLU_RS12865	0.47	+0.5
2,903,677	-		PFLU_RS12865	0.47	+0.4
2,903,770	+		PFLU_RS12865	0.56	-0.5
2,903,770	+		PFLU_RS12865	0.56	+1.2
2,903,770	+		PFLU_RS12865	0.56	-0.9
2,903,770	+		PFLU_RS12865	0.56	+1.1
2,903,770	+		PFLU_RS12865	0.56	+1.1
2,903,770	+		PFLU_RS12865	0.56	-1.5
2,903,770	+		PFLU_RS12865	0.56	+2.9
2,903,771	-		PFLU_RS12865	0.56	+0.2
2,903,771	-		PFLU_RS12865	0.56	-0.2
2,903,831	+		PFLU_RS12865	0.62	+0.5
2,903,831	+		PFLU_RS12865	0.62	+0.6
2,903,831	+		PFLU_RS12865	0.62	+0.2
2,903,831	+		PFLU_RS12865	0.62	+0.8
2,903,831	+		PFLU_RS12865	0.62	-0.5
2,903,832	-		PFLU_RS12865	0.62	-0.1
2,903,832	-		PFLU_RS12865	0.62	+1.3
2,903,832	-		PFLU_RS12865	0.62	+0.6
2,903,832	-		PFLU_RS12865	0.62	-1.2
2,903,832	-		PFLU_RS12865	0.62	+0.6
2,903,945	+		PFLU_RS12865	0.73	-0.2
2,903,945	+		PFLU_RS12865	0.73	-0.7
2,903,945	+		PFLU_RS12865	0.73	+0.9
2,903,945	+		PFLU_RS12865	0.73	-0.7
2,903,945	+		PFLU_RS12865	0.73	+0.1
2,903,945	+		PFLU_RS12865	0.73	+0.7
2,903,945	+		PFLU_RS12865	0.73	+0.4
2,903,946	-		PFLU_RS12865	0.73	+1.1
2,903,946	-		PFLU_RS12865	0.73	+0.5
2,903,946	-		PFLU_RS12865	0.73	-0.1
2,903,946	-		PFLU_RS12865	0.73	+0.2
2,903,946	-		PFLU_RS12865	0.73	-0.9
2,903,946	-		PFLU_RS12865	0.73	+0.8
2,903,997	-		PFLU_RS12865	0.78	-0.6
2,904,223	-				+0.1
2,904,223	-				-1.4
2,904,224	+				+0.7
2,904,224	+				-1.4
2,904,224	+				-2.5
2,904,224	+				-1.2
2,904,224	+				+0.5
2,904,224	+				+0.6
2,904,224	+				+0.1
2,904,224	+				-0.1
2,904,225	-				-1.2
2,904,225	-				+1.1
2,904,225	-				-0.9
2,904,225	-				-0.0
2,904,225	-				-0.2
2,904,225	-				+0.4
2,904,225	-				+0.4
2,904,225	-				-1.7
2,904,225	-				+0.1
2,904,397	+				+0.1
2,904,397	+				+0.5
2,904,397	+				+1.1
2,904,397	+				+2.6
2,904,398	-				+0.5
2,904,415	+				+0.4
2,904,415	+				+0.4
2,904,415	+				-1.0
2,904,416	-				+0.6
2,904,416	-				+0.9
2,904,451	+		PFLU_RS12870	0.12	-0.8
2,904,451	+		PFLU_RS12870	0.12	-0.5
2,904,451	+		PFLU_RS12870	0.12	-0.3
2,904,452	-		PFLU_RS12870	0.12	+1.3
2,904,452	-		PFLU_RS12870	0.12	+0.1
2,904,452	-		PFLU_RS12870	0.12	-0.3
2,904,452	-		PFLU_RS12870	0.12	+1.0
2,904,532	+		PFLU_RS12870	0.16	+0.6
2,904,532	+		PFLU_RS12870	0.16	-2.4
2,904,532	+		PFLU_RS12870	0.16	+0.2
2,904,532	+		PFLU_RS12870	0.16	-0.4
2,904,532	+		PFLU_RS12870	0.16	-0.0
2,904,532	+		PFLU_RS12870	0.16	+1.3
2,904,532	+		PFLU_RS12870	0.16	+0.2
2,904,532	+		PFLU_RS12870	0.16	-1.4
2,904,532	+		PFLU_RS12870	0.16	+2.7
2,904,532	+		PFLU_RS12870	0.16	-0.2
2,904,532	+		PFLU_RS12870	0.16	-0.7
2,904,532	+		PFLU_RS12870	0.16	+0.4
2,904,532	+		PFLU_RS12870	0.16	-0.0
2,904,533	-		PFLU_RS12870	0.16	+0.6
2,904,533	-		PFLU_RS12870	0.16	-0.3
2,904,533	-		PFLU_RS12870	0.16	-0.1
2,904,533	-		PFLU_RS12870	0.16	-0.1
2,904,533	-		PFLU_RS12870	0.16	-1.5
2,904,533	-		PFLU_RS12870	0.16	+0.3
2,904,533	-		PFLU_RS12870	0.16	-0.4
2,904,533	-		PFLU_RS12870	0.16	+0.8
2,904,533	-		PFLU_RS12870	0.16	+0.2
2,904,533	-		PFLU_RS12870	0.16	-0.6
2,904,533	-		PFLU_RS12870	0.16	-0.5
2,904,533	-		PFLU_RS12870	0.16	-2.2
2,904,533	-		PFLU_RS12870	0.16	-0.3
2,904,533	-		PFLU_RS12870	0.16	+0.2
2,904,533	-		PFLU_RS12870	0.16	+1.1
2,904,533	-		PFLU_RS12870	0.16	+0.4
2,904,533	-		PFLU_RS12870	0.16	-0.7
2,904,533	-		PFLU_RS12870	0.16	+0.3
2,904,574	+		PFLU_RS12870	0.18	-1.5
2,904,574	+		PFLU_RS12870	0.18	-0.6
2,904,574	+		PFLU_RS12870	0.18	+1.1
2,904,574	+		PFLU_RS12870	0.18	+0.6
2,904,574	+		PFLU_RS12870	0.18	+0.4
2,904,574	+		PFLU_RS12870	0.18	+1.6
2,904,574	+		PFLU_RS12870	0.18	+2.1
2,904,575	-		PFLU_RS12870	0.18	+1.6
2,904,575	-		PFLU_RS12870	0.18	-0.1
2,904,575	-		PFLU_RS12870	0.18	+1.4
2,904,575	-		PFLU_RS12870	0.18	-0.3
2,904,575	-		PFLU_RS12870	0.18	+1.1
2,904,575	-		PFLU_RS12870	0.18	+0.2
2,904,575	-		PFLU_RS12870	0.18	+0.4
2,904,575	-		PFLU_RS12870	0.18	-0.2
2,904,575	-		PFLU_RS12870	0.18	-0.2
2,904,575	-		PFLU_RS12870	0.18	-0.6
2,904,575	-		PFLU_RS12870	0.18	-0.5
2,904,575	-		PFLU_RS12870	0.18	-0.2
2,904,580	+		PFLU_RS12870	0.19	+1.7
2,904,580	+		PFLU_RS12870	0.19	+1.4
2,904,581	-		PFLU_RS12870	0.19	+1.1
2,904,581	-		PFLU_RS12870	0.19	+1.2
2,904,581	-		PFLU_RS12870	0.19	-0.5
2,904,581	-		PFLU_RS12870	0.19	-1.5
2,904,581	-		PFLU_RS12870	0.19	+0.0
2,904,635	-		PFLU_RS12870	0.22	+0.4
2,904,635	-		PFLU_RS12870	0.22	+0.1
2,904,635	-		PFLU_RS12870	0.22	+0.3
2,904,661	+		PFLU_RS12870	0.23	-0.5
2,904,661	+		PFLU_RS12870	0.23	+0.7
2,904,662	-		PFLU_RS12870	0.23	+0.4
2,904,662	-		PFLU_RS12870	0.23	-0.9
2,904,687	-		PFLU_RS12870	0.24	-0.9
2,904,724	+		PFLU_RS12870	0.26	+1.4
2,905,028	+		PFLU_RS12870	0.43	+0.6
2,905,028	+		PFLU_RS12870	0.43	+1.5
2,905,029	-		PFLU_RS12870	0.43	-0.3
2,905,030	+		PFLU_RS12870	0.43	-1.4
2,905,030	+		PFLU_RS12870	0.43	+2.5
2,905,030	+		PFLU_RS12870	0.43	-2.6
2,905,030	+		PFLU_RS12870	0.43	-0.9
2,905,030	+		PFLU_RS12870	0.43	-0.9
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	+1.5
2,905,030	+		PFLU_RS12870	0.43	+0.6
2,905,030	+		PFLU_RS12870	0.43	-0.2
2,905,030	+		PFLU_RS12870	0.43	+0.4
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	-1.5
2,905,030	+		PFLU_RS12870	0.43	-1.0
2,905,030	+		PFLU_RS12870	0.43	+0.3
2,905,030	+		PFLU_RS12870	0.43	+0.7
2,905,030	+		PFLU_RS12870	0.43	+1.8
2,905,030	+		PFLU_RS12870	0.43	+1.0
2,905,030	+		PFLU_RS12870	0.43	+1.1
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	-1.7
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	-2.1
2,905,030	+		PFLU_RS12870	0.43	+0.4
2,905,030	+		PFLU_RS12870	0.43	-1.7
2,905,030	+		PFLU_RS12870	0.43	+0.9
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	+0.7
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	-1.3
2,905,030	+		PFLU_RS12870	0.43	+1.7
2,905,030	+		PFLU_RS12870	0.43	-1.7
2,905,030	+		PFLU_RS12870	0.43	+0.3
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	-0.0
2,905,030	+		PFLU_RS12870	0.43	+0.5
2,905,030	+		PFLU_RS12870	0.43	+0.9
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	+0.6
2,905,030	+		PFLU_RS12870	0.43	-0.2
2,905,030	+		PFLU_RS12870	0.43	+0.6
2,905,030	+		PFLU_RS12870	0.43	-0.3
2,905,030	+		PFLU_RS12870	0.43	-0.5
2,905,030	+		PFLU_RS12870	0.43	+0.1
2,905,031	-		PFLU_RS12870	0.43	+2.1
2,905,031	-		PFLU_RS12870	0.43	+0.1
2,905,031	-		PFLU_RS12870	0.43	+0.8
2,905,031	-		PFLU_RS12870	0.43	+1.1
2,905,031	-		PFLU_RS12870	0.43	-0.0
2,905,031	-		PFLU_RS12870	0.43	-0.5
2,905,031	-		PFLU_RS12870	0.43	-0.2
2,905,031	-		PFLU_RS12870	0.43	+1.4
2,905,031	-		PFLU_RS12870	0.43	+0.6
2,905,031	-		PFLU_RS12870	0.43	-1.7
2,905,031	-		PFLU_RS12870	0.43	+0.1
2,905,031	-		PFLU_RS12870	0.43	-1.1
2,905,031	-		PFLU_RS12870	0.43	+0.4
2,905,031	-		PFLU_RS12870	0.43	+0.1
2,905,031	-		PFLU_RS12870	0.43	+1.1
2,905,031	-		PFLU_RS12870	0.43	+1.8
2,905,031	-		PFLU_RS12870	0.43	+0.4
2,905,031	-		PFLU_RS12870	0.43	-0.4
2,905,031	-		PFLU_RS12870	0.43	+2.1
2,905,031	-		PFLU_RS12870	0.43	+0.6
2,905,031	-		PFLU_RS12870	0.43	+0.6
2,905,031	-		PFLU_RS12870	0.43	+1.8
2,905,031	-		PFLU_RS12870	0.43	+0.2
2,905,031	-		PFLU_RS12870	0.43	-0.9
2,905,031	-		PFLU_RS12870	0.43	+0.6
2,905,034	+		PFLU_RS12870	0.43	+2.5
2,905,034	+		PFLU_RS12870	0.43	-0.0
2,905,034	+		PFLU_RS12870	0.43	-0.9
2,905,034	+		PFLU_RS12870	0.43	+1.7
2,905,034	+		PFLU_RS12870	0.43	-0.6
2,905,034	+		PFLU_RS12870	0.43	-1.4
2,905,034	+		PFLU_RS12870	0.43	+0.5
2,905,034	+		PFLU_RS12870	0.43	+1.1
2,905,034	+		PFLU_RS12870	0.43	-1.7
2,905,034	+		PFLU_RS12870	0.43	-0.1
2,905,035	-		PFLU_RS12870	0.43	+1.3
2,905,035	-		PFLU_RS12870	0.43	-0.1
2,905,035	-		PFLU_RS12870	0.43	-1.3
2,905,035	-		PFLU_RS12870	0.43	+0.4
2,905,035	-		PFLU_RS12870	0.43	-0.5
2,905,035	-		PFLU_RS12870	0.43	-1.4
2,905,035	-		PFLU_RS12870	0.43	+0.5
2,905,138	+		PFLU_RS12870	0.49	+0.1
2,905,138	+		PFLU_RS12870	0.49	-1.1
2,905,138	+		PFLU_RS12870	0.49	-0.3
2,905,138	+		PFLU_RS12870	0.49	+0.5
2,905,139	-		PFLU_RS12870	0.49	-0.6
2,905,139	-		PFLU_RS12870	0.49	-0.3
2,905,216	+		PFLU_RS12870	0.53	+0.9
2,905,216	+		PFLU_RS12870	0.53	+1.1
2,905,228	+		PFLU_RS12870	0.53	+1.3