Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18665 and HSERO_RS18670 overlap by 4 nucleotides HSERO_RS18670 and HSERO_RS18675 are separated by 42 nucleotides HSERO_RS18675 and HSERO_RS18680 overlap by 4 nucleotides HSERO_RS18680 and HSERO_RS18685 are separated by 144 nucleotides
HSERO_RS18665: HSERO_RS18665 - diguanylate cyclase, at 4,286,685 to 4,287,407
_RS18665
HSERO_RS18670: HSERO_RS18670 - Fe-S oxidoreductase, at 4,287,404 to 4,287,796
_RS18670
HSERO_RS18675: HSERO_RS18675 - hypothetical protein, at 4,287,839 to 4,288,402
_RS18675
HSERO_RS18680: HSERO_RS18680 - hypothetical protein, at 4,288,399 to 4,289,667
_RS18680
HSERO_RS18685: HSERO_RS18685 - hypothetical protein, at 4,289,812 to 4,290,423
_RS18685
Position (kb) 4288
4289
4290 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4287.418 kb on - strand at 4287.599 kb on + strand, within HSERO_RS18670 at 4287.622 kb on + strand, within HSERO_RS18670 at 4288.066 kb on + strand, within HSERO_RS18675 at 4288.091 kb on + strand, within HSERO_RS18675 at 4288.210 kb on - strand, within HSERO_RS18675 at 4288.402 kb on + strand at 4288.409 kb on + strand at 4288.599 kb on - strand, within HSERO_RS18680 at 4288.637 kb on + strand, within HSERO_RS18680 at 4288.665 kb on + strand, within HSERO_RS18680 at 4288.673 kb on - strand, within HSERO_RS18680 at 4288.708 kb on + strand, within HSERO_RS18680 at 4288.837 kb on - strand, within HSERO_RS18680 at 4288.862 kb on + strand, within HSERO_RS18680 at 4288.943 kb on + strand, within HSERO_RS18680 at 4289.050 kb on - strand, within HSERO_RS18680 at 4289.155 kb on + strand, within HSERO_RS18680 at 4289.172 kb on + strand, within HSERO_RS18680 at 4289.270 kb on + strand, within HSERO_RS18680 at 4289.270 kb on + strand, within HSERO_RS18680 at 4289.313 kb on + strand, within HSERO_RS18680 at 4289.558 kb on + strand at 4289.558 kb on + strand at 4289.566 kb on - strand at 4289.669 kb on + strand at 4289.677 kb on - strand at 4289.677 kb on - strand at 4290.203 kb on - strand, within HSERO_RS18685 at 4290.451 kb on + strand at 4290.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,287,418 - -0.6 4,287,599 + HSERO_RS18670 0.50 +0.8 4,287,622 + HSERO_RS18670 0.55 +0.2 4,288,066 + HSERO_RS18675 0.40 +0.1 4,288,091 + HSERO_RS18675 0.45 +0.8 4,288,210 - HSERO_RS18675 0.66 +1.0 4,288,402 + +0.7 4,288,409 + +0.9 4,288,599 - HSERO_RS18680 0.16 +2.3 4,288,637 + HSERO_RS18680 0.19 +1.2 4,288,665 + HSERO_RS18680 0.21 -0.5 4,288,673 - HSERO_RS18680 0.22 +4.7 4,288,708 + HSERO_RS18680 0.24 +1.3 4,288,837 - HSERO_RS18680 0.35 +0.3 4,288,862 + HSERO_RS18680 0.36 -0.1 4,288,943 + HSERO_RS18680 0.43 -1.8 4,289,050 - HSERO_RS18680 0.51 +0.8 4,289,155 + HSERO_RS18680 0.60 -0.5 4,289,172 + HSERO_RS18680 0.61 -0.2 4,289,270 + HSERO_RS18680 0.69 +0.6 4,289,270 + HSERO_RS18680 0.69 +0.4 4,289,313 + HSERO_RS18680 0.72 -0.0 4,289,558 + +0.8 4,289,558 + -0.2 4,289,566 - -0.7 4,289,669 + +0.4 4,289,677 - +0.3 4,289,677 - -0.5 4,290,203 - HSERO_RS18685 0.64 +0.2 4,290,451 + +0.5 4,290,469 + -0.4
Or see this region's nucleotide sequence