Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14950

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS14945 and HSERO_RS14950 are separated by 187 nucleotidesHSERO_RS14950 and HSERO_RS14955 are separated by 18 nucleotides HSERO_RS14945: HSERO_RS14945 - hypothetical protein, at 3,395,318 to 3,396,565 _RS14945 HSERO_RS14950: HSERO_RS14950 - purine-binding chemotaxis protein, at 3,396,753 to 3,397,259 _RS14950 HSERO_RS14955: HSERO_RS14955 - chemotaxis protein, at 3,397,278 to 3,399,437 _RS14955 Position (kb) 3396 3397 3398Strain fitness (log2 ratio) -2 -1 0 1at 3396.241 kb on - strand, within HSERO_RS14945at 3396.592 kb on - strandat 3396.841 kb on - strand, within HSERO_RS14950at 3396.939 kb on + strand, within HSERO_RS14950at 3397.757 kb on - strand, within HSERO_RS14955at 3397.851 kb on + strand, within HSERO_RS14955at 3397.910 kb on + strand, within HSERO_RS14955at 3397.945 kb on - strand, within HSERO_RS14955

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,396,241 - HSERO_RS14945 0.74 +0.3
3,396,592 - -0.8
3,396,841 - HSERO_RS14950 0.17 -1.9
3,396,939 + HSERO_RS14950 0.37 +1.3
3,397,757 - HSERO_RS14955 0.22 +1.5
3,397,851 + HSERO_RS14955 0.27 -0.2
3,397,910 + HSERO_RS14955 0.29 -0.2
3,397,945 - HSERO_RS14955 0.31 +0.9

Or see this region's nucleotide sequence