Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05985 and HSERO_RS05990 are separated by 359 nucleotides HSERO_RS05990 and HSERO_RS05995 are separated by 108 nucleotides HSERO_RS05995 and HSERO_RS06000 are separated by 69 nucleotides HSERO_RS06000 and HSERO_RS06005 are separated by 164 nucleotides HSERO_RS06005 and HSERO_RS06010 are separated by 94 nucleotides
HSERO_RS05985: HSERO_RS05985 - hypothetical protein, at 1,356,943 to 1,357,140
_RS05985
HSERO_RS05990: HSERO_RS05990 - hypothetical protein, at 1,357,500 to 1,357,814
_RS05990
HSERO_RS05995: HSERO_RS05995 - bacterioferritin, at 1,357,923 to 1,358,477
_RS05995
HSERO_RS06000: HSERO_RS06000 - hypothetical protein, at 1,358,547 to 1,358,759
_RS06000
HSERO_RS06005: HSERO_RS06005 - hypothetical protein, at 1,358,924 to 1,359,301
_RS06005
HSERO_RS06010: HSERO_RS06010 - transporter, at 1,359,396 to 1,359,725
_RS06010
Position (kb) 1357
1358
1359 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 1356.965 kb on + strand, within HSERO_RS05985 at 1356.992 kb on - strand, within HSERO_RS05985 at 1357.025 kb on - strand, within HSERO_RS05985 at 1357.025 kb on - strand, within HSERO_RS05985 at 1357.042 kb on + strand, within HSERO_RS05985 at 1357.079 kb on + strand, within HSERO_RS05985 at 1357.182 kb on + strand at 1357.217 kb on - strand at 1357.232 kb on + strand at 1357.263 kb on + strand at 1357.391 kb on - strand at 1357.391 kb on - strand at 1357.436 kb on - strand at 1357.514 kb on + strand at 1357.609 kb on - strand, within HSERO_RS05990 at 1357.643 kb on + strand, within HSERO_RS05990 at 1357.646 kb on + strand, within HSERO_RS05990 at 1357.735 kb on - strand, within HSERO_RS05990 at 1358.074 kb on - strand, within HSERO_RS05995 at 1358.074 kb on - strand, within HSERO_RS05995 at 1358.083 kb on + strand, within HSERO_RS05995 at 1358.120 kb on + strand, within HSERO_RS05995 at 1358.161 kb on - strand, within HSERO_RS05995 at 1358.182 kb on + strand, within HSERO_RS05995 at 1358.236 kb on - strand, within HSERO_RS05995 at 1358.275 kb on + strand, within HSERO_RS05995 at 1358.275 kb on + strand, within HSERO_RS05995 at 1358.283 kb on - strand, within HSERO_RS05995 at 1358.470 kb on + strand at 1358.499 kb on + strand at 1358.530 kb on + strand at 1358.690 kb on - strand, within HSERO_RS06000 at 1358.890 kb on - strand at 1358.903 kb on - strand at 1358.950 kb on - strand at 1359.021 kb on - strand, within HSERO_RS06005 at 1359.046 kb on + strand, within HSERO_RS06005 at 1359.054 kb on - strand, within HSERO_RS06005 at 1359.201 kb on - strand, within HSERO_RS06005 at 1359.260 kb on + strand, within HSERO_RS06005 at 1359.268 kb on - strand at 1359.291 kb on - strand at 1359.370 kb on + strand at 1359.390 kb on + strand at 1359.452 kb on + strand, within HSERO_RS06010
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,356,965 + HSERO_RS05985 0.11 -1.1 1,356,992 - HSERO_RS05985 0.25 -0.2 1,357,025 - HSERO_RS05985 0.41 -0.7 1,357,025 - HSERO_RS05985 0.41 +0.4 1,357,042 + HSERO_RS05985 0.50 +0.2 1,357,079 + HSERO_RS05985 0.69 +3.4 1,357,182 + -0.2 1,357,217 - -0.6 1,357,232 + -1.3 1,357,263 + +0.1 1,357,391 - +0.8 1,357,391 - -0.0 1,357,436 - +0.0 1,357,514 + +1.0 1,357,609 - HSERO_RS05990 0.35 +6.9 1,357,643 + HSERO_RS05990 0.45 +0.2 1,357,646 + HSERO_RS05990 0.46 -0.3 1,357,735 - HSERO_RS05990 0.75 -0.1 1,358,074 - HSERO_RS05995 0.27 -0.0 1,358,074 - HSERO_RS05995 0.27 +0.1 1,358,083 + HSERO_RS05995 0.29 -0.7 1,358,120 + HSERO_RS05995 0.35 +0.3 1,358,161 - HSERO_RS05995 0.43 +0.2 1,358,182 + HSERO_RS05995 0.47 +0.3 1,358,236 - HSERO_RS05995 0.56 -0.1 1,358,275 + HSERO_RS05995 0.63 +1.6 1,358,275 + HSERO_RS05995 0.63 +7.0 1,358,283 - HSERO_RS05995 0.65 +0.4 1,358,470 + +0.2 1,358,499 + +0.0 1,358,530 + -0.2 1,358,690 - HSERO_RS06000 0.67 -0.1 1,358,890 - +0.6 1,358,903 - -0.3 1,358,950 - -1.0 1,359,021 - HSERO_RS06005 0.26 -0.3 1,359,046 + HSERO_RS06005 0.32 -0.2 1,359,054 - HSERO_RS06005 0.34 +1.2 1,359,201 - HSERO_RS06005 0.73 +0.2 1,359,260 + HSERO_RS06005 0.89 +0.4 1,359,268 - +0.3 1,359,291 - +0.1 1,359,370 + +0.2 1,359,390 + +0.1 1,359,452 + HSERO_RS06010 0.17 +0.2
Or see this region's nucleotide sequence