Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05350 and HSERO_RS05355 overlap by 1 nucleotides HSERO_RS05355 and HSERO_RS05360 are separated by 33 nucleotides
HSERO_RS05350: HSERO_RS05350 - hypothetical protein, at 1,182,029 to 1,183,108
_RS05350
HSERO_RS05355: HSERO_RS05355 - hypothetical protein, at 1,183,108 to 1,183,845
_RS05355
HSERO_RS05360: HSERO_RS05360 - AraC family transcriptional regulator, at 1,183,879 to 1,184,892
_RS05360
Position (kb) 1183
1184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 1182.123 kb on + strand at 1182.207 kb on + strand, within HSERO_RS05350 at 1182.207 kb on + strand, within HSERO_RS05350 at 1182.381 kb on + strand, within HSERO_RS05350 at 1182.388 kb on + strand, within HSERO_RS05350 at 1182.429 kb on - strand, within HSERO_RS05350 at 1182.664 kb on + strand, within HSERO_RS05350 at 1182.738 kb on - strand, within HSERO_RS05350 at 1182.771 kb on + strand, within HSERO_RS05350 at 1182.779 kb on - strand, within HSERO_RS05350 at 1182.876 kb on - strand, within HSERO_RS05350 at 1183.007 kb on + strand at 1183.254 kb on + strand, within HSERO_RS05355 at 1183.304 kb on - strand, within HSERO_RS05355 at 1183.337 kb on - strand, within HSERO_RS05355 at 1183.355 kb on + strand, within HSERO_RS05355 at 1183.360 kb on - strand, within HSERO_RS05355 at 1183.533 kb on + strand, within HSERO_RS05355 at 1183.546 kb on - strand, within HSERO_RS05355 at 1183.643 kb on - strand, within HSERO_RS05355 at 1183.788 kb on - strand at 1183.858 kb on - strand at 1183.887 kb on + strand at 1184.003 kb on + strand, within HSERO_RS05360 at 1184.003 kb on + strand, within HSERO_RS05360 at 1184.011 kb on - strand, within HSERO_RS05360 at 1184.031 kb on - strand, within HSERO_RS05360 at 1184.077 kb on - strand, within HSERO_RS05360 at 1184.102 kb on + strand, within HSERO_RS05360 at 1184.352 kb on - strand at 1184.398 kb on - strand, within HSERO_RS05360 at 1184.752 kb on - strand, within HSERO_RS05360 at 1184.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,182,123 + +0.9 1,182,207 + HSERO_RS05350 0.16 -1.1 1,182,207 + HSERO_RS05350 0.16 +0.8 1,182,381 + HSERO_RS05350 0.33 -0.7 1,182,388 + HSERO_RS05350 0.33 +0.1 1,182,429 - HSERO_RS05350 0.37 +0.0 1,182,664 + HSERO_RS05350 0.59 +0.6 1,182,738 - HSERO_RS05350 0.66 -0.3 1,182,771 + HSERO_RS05350 0.69 -0.4 1,182,779 - HSERO_RS05350 0.69 +0.7 1,182,876 - HSERO_RS05350 0.78 -0.6 1,183,007 + +0.5 1,183,254 + HSERO_RS05355 0.20 +0.4 1,183,304 - HSERO_RS05355 0.27 +8.1 1,183,337 - HSERO_RS05355 0.31 +0.7 1,183,355 + HSERO_RS05355 0.33 +0.1 1,183,360 - HSERO_RS05355 0.34 -0.1 1,183,533 + HSERO_RS05355 0.58 -1.2 1,183,546 - HSERO_RS05355 0.59 +2.6 1,183,643 - HSERO_RS05355 0.72 -2.9 1,183,788 - +0.8 1,183,858 - -0.4 1,183,887 + +1.2 1,184,003 + HSERO_RS05360 0.12 -0.1 1,184,003 + HSERO_RS05360 0.12 +0.1 1,184,011 - HSERO_RS05360 0.13 -0.4 1,184,031 - HSERO_RS05360 0.15 +0.2 1,184,077 - HSERO_RS05360 0.20 +1.1 1,184,102 + HSERO_RS05360 0.22 -0.9 1,184,352 - -0.9 1,184,398 - HSERO_RS05360 0.51 +0.6 1,184,752 - HSERO_RS05360 0.86 +0.3 1,184,815 - -0.1
Or see this region's nucleotide sequence