Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03680

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03675 and HSERO_RS03680 are separated by 37 nucleotidesHSERO_RS03680 and HSERO_RS03685 overlap by 4 nucleotides HSERO_RS03675: HSERO_RS03675 - type VI secretion protein, at 803,061 to 805,925 _RS03675 HSERO_RS03680: HSERO_RS03680 - type VI secretion system protein ImpK, at 805,963 to 806,754 _RS03680 HSERO_RS03685: HSERO_RS03685 - type VI secretion protein, at 806,751 to 808,097 _RS03685 Position (kb) 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2 3at 805.129 kb on + strand, within HSERO_RS03675at 805.233 kb on - strand, within HSERO_RS03675at 805.276 kb on + strand, within HSERO_RS03675at 805.358 kb on + strand, within HSERO_RS03675at 805.432 kb on + strand, within HSERO_RS03675at 805.465 kb on + strand, within HSERO_RS03675at 805.561 kb on + strand, within HSERO_RS03675at 805.903 kb on + strandat 805.913 kb on + strandat 805.966 kb on + strandat 805.969 kb on - strandat 805.969 kb on - strandat 805.969 kb on - strandat 805.991 kb on - strandat 806.070 kb on - strand, within HSERO_RS03680at 806.070 kb on - strand, within HSERO_RS03680at 806.539 kb on - strand, within HSERO_RS03680at 806.641 kb on + strand, within HSERO_RS03680at 806.905 kb on + strand, within HSERO_RS03685at 807.029 kb on + strand, within HSERO_RS03685at 807.252 kb on - strand, within HSERO_RS03685at 807.353 kb on - strand, within HSERO_RS03685at 807.402 kb on + strand, within HSERO_RS03685at 807.402 kb on + strand, within HSERO_RS03685at 807.548 kb on - strand, within HSERO_RS03685at 807.565 kb on + strand, within HSERO_RS03685at 807.581 kb on + strand, within HSERO_RS03685at 807.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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805,129 + HSERO_RS03675 0.72 +0.6
805,233 - HSERO_RS03675 0.76 +0.3
805,276 + HSERO_RS03675 0.77 +1.4
805,358 + HSERO_RS03675 0.80 +1.6
805,432 + HSERO_RS03675 0.83 +2.3
805,465 + HSERO_RS03675 0.84 +0.0
805,561 + HSERO_RS03675 0.87 +0.2
805,903 + +0.6
805,913 + +1.4
805,966 + +0.1
805,969 - +1.3
805,969 - +3.0
805,969 - +1.0
805,991 - +0.2
806,070 - HSERO_RS03680 0.14 -0.1
806,070 - HSERO_RS03680 0.14 +1.4
806,539 - HSERO_RS03680 0.73 -2.3
806,641 + HSERO_RS03680 0.86 +1.8
806,905 + HSERO_RS03685 0.11 +1.8
807,029 + HSERO_RS03685 0.21 +1.6
807,252 - HSERO_RS03685 0.37 +1.1
807,353 - HSERO_RS03685 0.45 +1.0
807,402 + HSERO_RS03685 0.48 -0.0
807,402 + HSERO_RS03685 0.48 +0.7
807,548 - HSERO_RS03685 0.59 +0.2
807,565 + HSERO_RS03685 0.60 +0.8
807,581 + HSERO_RS03685 0.62 +1.4
807,651 - +1.1

Or see this region's nucleotide sequence