Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03270

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS03265 and HSERO_RS03270 are separated by 420 nucleotidesHSERO_RS03270 and HSERO_RS03275 are separated by 359 nucleotides HSERO_RS03265: HSERO_RS03265 - transcription regulator protein, at 717,928 to 719,556 _RS03265 HSERO_RS03270: HSERO_RS03270 - protein RecA, at 719,977 to 721,032 _RS03270 HSERO_RS03275: HSERO_RS03275 - regulatory protein RecX, at 721,392 to 721,856 _RS03275 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 719.390 kb on - strand, within HSERO_RS03265at 719.390 kb on - strand, within HSERO_RS03265at 719.516 kb on - strandat 719.626 kb on + strandat 719.651 kb on - strandat 719.670 kb on + strandat 719.727 kb on + strandat 719.842 kb on + strandat 720.002 kb on + strandat 720.328 kb on - strand, within HSERO_RS03270at 720.669 kb on - strand, within HSERO_RS03270at 720.773 kb on + strand, within HSERO_RS03270at 720.844 kb on - strand, within HSERO_RS03270at 720.905 kb on - strand, within HSERO_RS03270at 720.972 kb on + strandat 721.088 kb on + strandat 721.110 kb on + strandat 721.209 kb on - strandat 721.219 kb on + strandat 721.338 kb on - strandat 721.367 kb on + strandat 721.477 kb on + strand, within HSERO_RS03275at 721.528 kb on + strand, within HSERO_RS03275at 721.528 kb on + strand, within HSERO_RS03275at 721.536 kb on - strand, within HSERO_RS03275at 721.761 kb on + strand, within HSERO_RS03275at 721.761 kb on + strand, within HSERO_RS03275at 721.779 kb on - strand, within HSERO_RS03275at 721.825 kb on + strandat 722.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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719,390 - HSERO_RS03265 0.90 -0.5
719,390 - HSERO_RS03265 0.90 -0.3
719,516 - +1.1
719,626 + +0.1
719,651 - +0.6
719,670 + -0.4
719,727 + -0.2
719,842 + -0.6
720,002 + -1.8
720,328 - HSERO_RS03270 0.33 -1.9
720,669 - HSERO_RS03270 0.66 -1.2
720,773 + HSERO_RS03270 0.75 -1.0
720,844 - HSERO_RS03270 0.82 -3.1
720,905 - HSERO_RS03270 0.88 -1.0
720,972 + -0.7
721,088 + +0.8
721,110 + -2.6
721,209 - +2.8
721,219 + +0.9
721,338 - +0.5
721,367 + +0.0
721,477 + HSERO_RS03275 0.18 -0.3
721,528 + HSERO_RS03275 0.29 -0.0
721,528 + HSERO_RS03275 0.29 -2.5
721,536 - HSERO_RS03275 0.31 -0.3
721,761 + HSERO_RS03275 0.79 +0.2
721,761 + HSERO_RS03275 0.79 -0.2
721,779 - HSERO_RS03275 0.83 -0.1
721,825 + +0.3
722,025 - -1.2

Or see this region's nucleotide sequence