Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00145

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS00140 and HSERO_RS00145 are separated by 51 nucleotidesHSERO_RS00145 and HSERO_RS00150 are separated by 42 nucleotides HSERO_RS00140: HSERO_RS00140 - hypothetical protein, at 39,640 to 40,713 _RS00140 HSERO_RS00145: HSERO_RS00145 - hypothetical protein, at 40,765 to 41,031 _RS00145 HSERO_RS00150: HSERO_RS00150 - chemotaxis protein, at 41,074 to 42,678 _RS00150 Position (kb) 40 41 42Strain fitness (log2 ratio) -1 0 1 2 3at 39.777 kb on + strand, within HSERO_RS00140at 39.785 kb on - strand, within HSERO_RS00140at 39.785 kb on - strand, within HSERO_RS00140at 39.865 kb on - strand, within HSERO_RS00140at 39.883 kb on - strand, within HSERO_RS00140at 39.923 kb on - strand, within HSERO_RS00140at 39.980 kb on - strand, within HSERO_RS00140at 39.980 kb on - strand, within HSERO_RS00140at 40.007 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.041 kb on + strand, within HSERO_RS00140at 40.063 kb on + strand, within HSERO_RS00140at 40.080 kb on + strand, within HSERO_RS00140at 40.088 kb on - strand, within HSERO_RS00140at 40.088 kb on - strand, within HSERO_RS00140at 40.204 kb on - strand, within HSERO_RS00140at 40.422 kb on + strand, within HSERO_RS00140at 40.453 kb on - strandat 40.806 kb on + strand, within HSERO_RS00145at 40.829 kb on - strand, within HSERO_RS00145at 40.954 kb on + strand, within HSERO_RS00145at 41.078 kb on - strandat 41.096 kb on - strandat 41.304 kb on - strand, within HSERO_RS00150at 41.523 kb on - strand, within HSERO_RS00150at 41.621 kb on - strand, within HSERO_RS00150at 41.755 kb on + strand, within HSERO_RS00150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
39,777 + HSERO_RS00140 0.13 -1.1
39,785 - HSERO_RS00140 0.14 -1.3
39,785 - HSERO_RS00140 0.14 -0.4
39,865 - HSERO_RS00140 0.21 +0.6
39,883 - HSERO_RS00140 0.23 +0.4
39,923 - HSERO_RS00140 0.26 -0.1
39,980 - HSERO_RS00140 0.32 +0.1
39,980 - HSERO_RS00140 0.32 -0.4
40,007 + HSERO_RS00140 0.34 -0.3
40,041 + HSERO_RS00140 0.37 -0.1
40,041 + HSERO_RS00140 0.37 +0.3
40,041 + HSERO_RS00140 0.37 +0.2
40,063 + HSERO_RS00140 0.39 +0.3
40,080 + HSERO_RS00140 0.41 +0.0
40,088 - HSERO_RS00140 0.42 -0.9
40,088 - HSERO_RS00140 0.42 +0.7
40,204 - HSERO_RS00140 0.53 +0.5
40,422 + HSERO_RS00140 0.73 -0.6
40,453 - -0.9
40,806 + HSERO_RS00145 0.15 -0.4
40,829 - HSERO_RS00145 0.24 -0.3
40,954 + HSERO_RS00145 0.71 +2.9
41,078 - -0.9
41,096 - -0.7
41,304 - HSERO_RS00150 0.14 +0.3
41,523 - HSERO_RS00150 0.28 +0.2
41,621 - HSERO_RS00150 0.34 +0.1
41,755 + HSERO_RS00150 0.42 +0.7

Or see this region's nucleotide sequence