Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_992

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_992 and Pf6N2E2_993 overlap by 4 nucleotides Pf6N2E2_992 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 1,160,666 to 1,161,694 _992 Pf6N2E2_993 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 1,161,691 to 1,163,196 _993 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -2 -1 0 1at 1159.678 kb on + strandat 1159.679 kb on - strandat 1159.796 kb on + strandat 1159.801 kb on - strandat 1159.801 kb on - strandat 1159.846 kb on - strandat 1159.890 kb on - strandat 1159.890 kb on - strandat 1159.893 kb on + strandat 1159.894 kb on - strandat 1159.894 kb on - strandat 1160.099 kb on + strandat 1160.100 kb on - strandat 1160.439 kb on - strandat 1160.439 kb on - strandat 1160.555 kb on - strandat 1160.702 kb on + strandat 1160.774 kb on + strand, within Pf6N2E2_992at 1160.809 kb on - strand, within Pf6N2E2_992at 1161.051 kb on - strand, within Pf6N2E2_992at 1161.208 kb on - strand, within Pf6N2E2_992at 1161.208 kb on - strand, within Pf6N2E2_992at 1161.274 kb on + strand, within Pf6N2E2_992at 1161.274 kb on + strand, within Pf6N2E2_992at 1161.324 kb on - strand, within Pf6N2E2_992at 1161.332 kb on + strand, within Pf6N2E2_992at 1161.356 kb on + strand, within Pf6N2E2_992at 1161.357 kb on - strand, within Pf6N2E2_992at 1161.357 kb on - strand, within Pf6N2E2_992at 1161.480 kb on + strand, within Pf6N2E2_992at 1161.551 kb on + strand, within Pf6N2E2_992at 1161.608 kb on + strandat 1161.852 kb on + strand, within Pf6N2E2_993at 1161.893 kb on + strand, within Pf6N2E2_993at 1161.919 kb on + strand, within Pf6N2E2_993at 1161.919 kb on + strand, within Pf6N2E2_993at 1162.026 kb on + strand, within Pf6N2E2_993at 1162.030 kb on + strand, within Pf6N2E2_993at 1162.030 kb on + strand, within Pf6N2E2_993at 1162.069 kb on + strand, within Pf6N2E2_993at 1162.172 kb on - strand, within Pf6N2E2_993at 1162.202 kb on + strand, within Pf6N2E2_993at 1162.202 kb on + strand, within Pf6N2E2_993at 1162.203 kb on - strand, within Pf6N2E2_993at 1162.242 kb on + strand, within Pf6N2E2_993at 1162.307 kb on - strand, within Pf6N2E2_993at 1162.307 kb on - strand, within Pf6N2E2_993at 1162.342 kb on + strand, within Pf6N2E2_993at 1162.498 kb on + strand, within Pf6N2E2_993at 1162.563 kb on + strand, within Pf6N2E2_993at 1162.563 kb on + strand, within Pf6N2E2_993at 1162.567 kb on - strand, within Pf6N2E2_993at 1162.615 kb on + strand, within Pf6N2E2_993

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
1,159,678 + -0.5
1,159,679 - -0.1
1,159,796 + -1.5
1,159,801 - -1.0
1,159,801 - -1.0
1,159,846 - -0.5
1,159,890 - -1.5
1,159,890 - -0.3
1,159,893 + -1.5
1,159,894 - -0.3
1,159,894 - -1.5
1,160,099 + +1.1
1,160,100 - -0.2
1,160,439 - +0.5
1,160,439 - -0.3
1,160,555 - +1.5
1,160,702 + -0.1
1,160,774 + Pf6N2E2_992 0.10 -0.5
1,160,809 - Pf6N2E2_992 0.14 -0.5
1,161,051 - Pf6N2E2_992 0.37 -0.7
1,161,208 - Pf6N2E2_992 0.53 -1.0
1,161,208 - Pf6N2E2_992 0.53 +1.7
1,161,274 + Pf6N2E2_992 0.59 -0.5
1,161,274 + Pf6N2E2_992 0.59 +0.8
1,161,324 - Pf6N2E2_992 0.64 -0.8
1,161,332 + Pf6N2E2_992 0.65 -2.7
1,161,356 + Pf6N2E2_992 0.67 +0.5
1,161,357 - Pf6N2E2_992 0.67 -0.8
1,161,357 - Pf6N2E2_992 0.67 +0.8
1,161,480 + Pf6N2E2_992 0.79 -0.5
1,161,551 + Pf6N2E2_992 0.86 +0.1
1,161,608 + +0.5
1,161,852 + Pf6N2E2_993 0.11 +1.4
1,161,893 + Pf6N2E2_993 0.13 -0.5
1,161,919 + Pf6N2E2_993 0.15 +0.1
1,161,919 + Pf6N2E2_993 0.15 +0.5
1,162,026 + Pf6N2E2_993 0.22 +1.0
1,162,030 + Pf6N2E2_993 0.23 -0.1
1,162,030 + Pf6N2E2_993 0.23 -2.3
1,162,069 + Pf6N2E2_993 0.25 -0.9
1,162,172 - Pf6N2E2_993 0.32 -1.8
1,162,202 + Pf6N2E2_993 0.34 -0.8
1,162,202 + Pf6N2E2_993 0.34 +1.5
1,162,203 - Pf6N2E2_993 0.34 -0.0
1,162,242 + Pf6N2E2_993 0.37 -1.0
1,162,307 - Pf6N2E2_993 0.41 -1.0
1,162,307 - Pf6N2E2_993 0.41 -1.0
1,162,342 + Pf6N2E2_993 0.43 +0.2
1,162,498 + Pf6N2E2_993 0.54 -1.9
1,162,563 + Pf6N2E2_993 0.58 -1.5
1,162,563 + Pf6N2E2_993 0.58 -0.5
1,162,567 - Pf6N2E2_993 0.58 -0.5
1,162,615 + Pf6N2E2_993 0.61 -1.0

Or see this region's nucleotide sequence