Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_573

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_571 and Pf6N2E2_572 are separated by 184 nucleotidesPf6N2E2_572 and Pf6N2E2_573 are separated by 67 nucleotidesPf6N2E2_573 and Pf6N2E2_574 are separated by 143 nucleotidesPf6N2E2_574 and Pf6N2E2_575 are separated by 218 nucleotides Pf6N2E2_571 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 645,326 to 646,369 _571 Pf6N2E2_572 - hypothetical protein, at 646,554 to 647,033 _572 Pf6N2E2_573 - Potassium uptake protein TrkH, at 647,101 to 648,555 _573 Pf6N2E2_574 - Transporter, LysE family, at 648,699 to 649,286 _574 Pf6N2E2_575 - Transcriptional regulator, AraC family, at 649,505 to 650,329 _575 Position (kb) 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 646.298 kb on - strandat 646.400 kb on + strandat 646.400 kb on + strandat 646.420 kb on + strandat 646.420 kb on + strandat 646.420 kb on + strandat 646.420 kb on + strandat 646.421 kb on - strandat 646.421 kb on - strandat 646.517 kb on - strandat 646.565 kb on + strandat 646.565 kb on + strandat 646.566 kb on - strandat 646.656 kb on + strand, within Pf6N2E2_572at 646.656 kb on + strand, within Pf6N2E2_572at 646.926 kb on - strand, within Pf6N2E2_572at 646.973 kb on + strand, within Pf6N2E2_572at 647.106 kb on - strandat 647.174 kb on - strandat 647.347 kb on - strand, within Pf6N2E2_573at 647.347 kb on - strand, within Pf6N2E2_573at 647.412 kb on - strand, within Pf6N2E2_573at 647.467 kb on + strand, within Pf6N2E2_573at 647.468 kb on - strand, within Pf6N2E2_573at 647.480 kb on - strand, within Pf6N2E2_573at 647.480 kb on - strand, within Pf6N2E2_573at 647.546 kb on + strand, within Pf6N2E2_573at 647.547 kb on - strand, within Pf6N2E2_573at 647.547 kb on - strand, within Pf6N2E2_573at 647.547 kb on - strand, within Pf6N2E2_573at 647.579 kb on - strand, within Pf6N2E2_573at 647.585 kb on + strand, within Pf6N2E2_573at 647.585 kb on + strand, within Pf6N2E2_573at 647.585 kb on + strand, within Pf6N2E2_573at 647.586 kb on - strand, within Pf6N2E2_573at 647.586 kb on - strand, within Pf6N2E2_573at 647.790 kb on - strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.990 kb on + strand, within Pf6N2E2_573at 647.991 kb on - strand, within Pf6N2E2_573at 647.991 kb on - strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.005 kb on + strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.006 kb on - strand, within Pf6N2E2_573at 648.257 kb on + strand, within Pf6N2E2_573at 648.257 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.335 kb on + strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.336 kb on - strand, within Pf6N2E2_573at 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.455 kb on + strandat 648.456 kb on - strandat 648.456 kb on - strandat 648.456 kb on - strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.555 kb on + strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.556 kb on - strandat 648.587 kb on - strandat 648.659 kb on + strandat 648.659 kb on + strandat 648.682 kb on + strandat 648.682 kb on + strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.683 kb on - strandat 648.693 kb on + strandat 648.746 kb on + strandat 648.746 kb on + strandat 648.747 kb on - strandat 648.747 kb on - strandat 649.020 kb on + strand, within Pf6N2E2_574at 649.020 kb on + strand, within Pf6N2E2_574at 649.134 kb on + strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.135 kb on - strand, within Pf6N2E2_574at 649.149 kb on + strand, within Pf6N2E2_574at 649.205 kb on + strand, within Pf6N2E2_574at 649.269 kb on + strandat 649.269 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.273 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.326 kb on + strandat 649.327 kb on - strandat 649.327 kb on - strandat 649.337 kb on + strandat 649.504 kb on - strandat 649.516 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
646,298 - +0.3
646,400 + +0.4
646,400 + +1.3
646,420 + +0.1
646,420 + -0.3
646,420 + -0.5
646,420 + -0.1
646,421 - -1.3
646,421 - +2.3
646,517 - +0.3
646,565 + +1.1
646,565 + -0.3
646,566 - +0.4
646,656 + Pf6N2E2_572 0.21 -1.3
646,656 + Pf6N2E2_572 0.21 +0.3
646,926 - Pf6N2E2_572 0.78 +0.7
646,973 + Pf6N2E2_572 0.87 +0.0
647,106 - +0.0
647,174 - +0.4
647,347 - Pf6N2E2_573 0.17 +0.7
647,347 - Pf6N2E2_573 0.17 +2.7
647,412 - Pf6N2E2_573 0.21 -0.3
647,467 + Pf6N2E2_573 0.25 -0.3
647,468 - Pf6N2E2_573 0.25 +1.3
647,480 - Pf6N2E2_573 0.26 +0.4
647,480 - Pf6N2E2_573 0.26 -2.1
647,546 + Pf6N2E2_573 0.31 +0.2
647,547 - Pf6N2E2_573 0.31 -1.3
647,547 - Pf6N2E2_573 0.31 -1.6
647,547 - Pf6N2E2_573 0.31 +0.5
647,579 - Pf6N2E2_573 0.33 +0.7
647,585 + Pf6N2E2_573 0.33 -1.5
647,585 + Pf6N2E2_573 0.33 +0.7
647,585 + Pf6N2E2_573 0.33 +0.4
647,586 - Pf6N2E2_573 0.33 +0.9
647,586 - Pf6N2E2_573 0.33 -0.1
647,790 - Pf6N2E2_573 0.47 -1.0
647,990 + Pf6N2E2_573 0.61 -0.3
647,990 + Pf6N2E2_573 0.61 -1.1
647,990 + Pf6N2E2_573 0.61 +0.1
647,990 + Pf6N2E2_573 0.61 +0.4
647,991 - Pf6N2E2_573 0.61 +0.5
647,991 - Pf6N2E2_573 0.61 +1.1
648,005 + Pf6N2E2_573 0.62 +0.7
648,005 + Pf6N2E2_573 0.62 -0.5
648,005 + Pf6N2E2_573 0.62 -0.7
648,005 + Pf6N2E2_573 0.62 +0.3
648,006 - Pf6N2E2_573 0.62 +1.4
648,006 - Pf6N2E2_573 0.62 -0.3
648,006 - Pf6N2E2_573 0.62 -0.1
648,006 - Pf6N2E2_573 0.62 -0.6
648,006 - Pf6N2E2_573 0.62 -0.8
648,006 - Pf6N2E2_573 0.62 -1.2
648,257 + Pf6N2E2_573 0.79 -0.2
648,257 + Pf6N2E2_573 0.79 -0.1
648,335 + Pf6N2E2_573 0.85 -1.3
648,335 + Pf6N2E2_573 0.85 -0.1
648,335 + Pf6N2E2_573 0.85 -0.5
648,335 + Pf6N2E2_573 0.85 +0.7
648,335 + Pf6N2E2_573 0.85 -0.9
648,335 + Pf6N2E2_573 0.85 -0.4
648,336 - Pf6N2E2_573 0.85 +0.0
648,336 - Pf6N2E2_573 0.85 -0.1
648,336 - Pf6N2E2_573 0.85 -2.3
648,336 - Pf6N2E2_573 0.85 +0.9
648,336 - Pf6N2E2_573 0.85 +0.7
648,336 - Pf6N2E2_573 0.85 +0.0
648,336 - Pf6N2E2_573 0.85 -0.3
648,336 - Pf6N2E2_573 0.85 +1.3
648,336 - Pf6N2E2_573 0.85 +0.9
648,336 - Pf6N2E2_573 0.85 -0.1
648,336 - Pf6N2E2_573 0.85 +1.0
648,336 - Pf6N2E2_573 0.85 -2.2
648,336 - Pf6N2E2_573 0.85 -0.7
648,336 - Pf6N2E2_573 0.85 -0.5
648,336 - Pf6N2E2_573 0.85 -0.3
648,455 + -1.1
648,455 + +0.1
648,455 + -1.9
648,455 + -0.5
648,455 + +0.4
648,455 + -2.1
648,455 + -0.2
648,455 + +0.7
648,456 - -0.2
648,456 - +0.8
648,456 - -0.1
648,555 + -0.3
648,555 + -0.9
648,555 + -0.1
648,555 + -0.3
648,555 + -1.7
648,555 + -0.5
648,555 + -0.8
648,556 - +0.2
648,556 - +0.2
648,556 - +0.1
648,556 - +1.4
648,587 - +0.7
648,659 + -0.1
648,659 + -0.6
648,682 + -0.1
648,682 + -0.9
648,683 - +0.4
648,683 - -0.3
648,683 - +1.7
648,693 + +0.3
648,746 + +1.0
648,746 + +0.0
648,747 - +2.3
648,747 - +0.4
649,020 + Pf6N2E2_574 0.55 +0.6
649,020 + Pf6N2E2_574 0.55 +0.5
649,134 + Pf6N2E2_574 0.74 +0.4
649,135 - Pf6N2E2_574 0.74 +0.1
649,135 - Pf6N2E2_574 0.74 -0.9
649,149 + Pf6N2E2_574 0.77 +0.7
649,205 + Pf6N2E2_574 0.86 -1.5
649,269 + -0.9
649,269 + -0.7
649,273 + +0.1
649,273 + -0.3
649,273 + +0.1
649,273 + -0.3
649,326 + +0.3
649,326 + -1.3
649,326 + +1.6
649,326 + +1.3
649,327 - +1.0
649,327 - -1.3
649,337 + -0.9
649,504 - +0.7
649,516 - +0.2

Or see this region's nucleotide sequence