Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2883

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2882 and Pf6N2E2_2883 are separated by 233 nucleotidesPf6N2E2_2883 and Pf6N2E2_2884 are separated by 17 nucleotidesPf6N2E2_2884 and Pf6N2E2_2885 overlap by 14 nucleotides Pf6N2E2_2882 - Isopenicillin N epimerase (EC 5.1.1.17), at 3,369,514 to 3,370,701 _2882 Pf6N2E2_2883 - 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 3,370,935 to 3,371,600 _2883 Pf6N2E2_2884 - 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type, at 3,371,618 to 3,372,331 _2884 Pf6N2E2_2885 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 3,372,318 to 3,373,787 _2885 Position (kb) 3370 3371 3372Strain fitness (log2 ratio) -1 0 1 2at 3370.036 kb on + strand, within Pf6N2E2_2882at 3370.036 kb on + strand, within Pf6N2E2_2882at 3370.036 kb on + strand, within Pf6N2E2_2882at 3370.036 kb on + strand, within Pf6N2E2_2882at 3370.037 kb on - strand, within Pf6N2E2_2882at 3370.037 kb on - strand, within Pf6N2E2_2882at 3370.235 kb on - strand, within Pf6N2E2_2882at 3370.235 kb on - strand, within Pf6N2E2_2882at 3370.288 kb on + strand, within Pf6N2E2_2882at 3370.289 kb on - strand, within Pf6N2E2_2882at 3370.289 kb on - strand, within Pf6N2E2_2882at 3370.421 kb on - strand, within Pf6N2E2_2882at 3370.421 kb on - strand, within Pf6N2E2_2882at 3370.421 kb on - strand, within Pf6N2E2_2882at 3370.498 kb on + strand, within Pf6N2E2_2882at 3370.498 kb on + strand, within Pf6N2E2_2882at 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.699 kb on + strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.700 kb on - strandat 3370.852 kb on + strandat 3370.852 kb on + strandat 3370.853 kb on - strandat 3370.853 kb on - strandat 3370.898 kb on - strandat 3370.905 kb on + strandat 3370.906 kb on - strandat 3371.632 kb on - strandat 3371.632 kb on - strandat 3371.632 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3372.332 kb on - strandat 3372.533 kb on - strand, within Pf6N2E2_2885at 3372.560 kb on - strand, within Pf6N2E2_2885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
3,370,036 + Pf6N2E2_2882 0.44 -0.5
3,370,036 + Pf6N2E2_2882 0.44 -0.2
3,370,036 + Pf6N2E2_2882 0.44 -0.7
3,370,036 + Pf6N2E2_2882 0.44 +0.2
3,370,037 - Pf6N2E2_2882 0.44 +0.3
3,370,037 - Pf6N2E2_2882 0.44 +0.7
3,370,235 - Pf6N2E2_2882 0.61 -1.0
3,370,235 - Pf6N2E2_2882 0.61 +0.8
3,370,288 + Pf6N2E2_2882 0.65 +0.8
3,370,289 - Pf6N2E2_2882 0.65 +2.7
3,370,289 - Pf6N2E2_2882 0.65 +1.1
3,370,421 - Pf6N2E2_2882 0.76 +1.1
3,370,421 - Pf6N2E2_2882 0.76 -0.5
3,370,421 - Pf6N2E2_2882 0.76 +0.1
3,370,498 + Pf6N2E2_2882 0.83 +0.7
3,370,498 + Pf6N2E2_2882 0.83 +0.6
3,370,699 + -0.6
3,370,699 + +0.5
3,370,699 + -1.7
3,370,699 + +0.1
3,370,699 + +0.5
3,370,699 + +1.4
3,370,699 + +0.1
3,370,699 + +0.1
3,370,699 + +0.1
3,370,699 + -0.5
3,370,700 - +0.1
3,370,700 - +0.8
3,370,700 - +0.0
3,370,700 - +0.5
3,370,700 - -1.5
3,370,700 - -1.2
3,370,700 - +0.5
3,370,700 - +0.5
3,370,700 - +1.5
3,370,700 - +0.6
3,370,700 - +1.1
3,370,700 - -1.0
3,370,700 - +1.1
3,370,700 - -0.2
3,370,852 + -0.5
3,370,852 + -0.6
3,370,853 - -0.2
3,370,853 - -0.3
3,370,898 - -1.7
3,370,905 + +1.3
3,370,906 - +1.5
3,371,632 - +0.3
3,371,632 - -0.5
3,371,632 - -0.6
3,371,645 - -0.5
3,371,645 - +0.1
3,372,332 - -0.0
3,372,533 - Pf6N2E2_2885 0.15 +1.1
3,372,560 - Pf6N2E2_2885 0.16 +0.8

Or see this region's nucleotide sequence