Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1771

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1770 and Pf6N2E2_1771 are separated by 56 nucleotidesPf6N2E2_1771 and Pf6N2E2_1772 are separated by 65 nucleotides Pf6N2E2_1770 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 2,091,365 to 2,092,438 _1770 Pf6N2E2_1771 - Response regulator, at 2,092,495 to 2,093,475 _1771 Pf6N2E2_1772 - Signal transduction histidine kinase, at 2,093,541 to 2,096,411 _1772 Position (kb) 2092 2093 2094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2091.507 kb on - strand, within Pf6N2E2_1770at 2091.507 kb on - strand, within Pf6N2E2_1770at 2091.729 kb on - strand, within Pf6N2E2_1770at 2091.729 kb on - strand, within Pf6N2E2_1770at 2091.792 kb on + strand, within Pf6N2E2_1770at 2091.792 kb on + strand, within Pf6N2E2_1770at 2091.792 kb on + strand, within Pf6N2E2_1770at 2091.793 kb on - strand, within Pf6N2E2_1770at 2091.793 kb on - strand, within Pf6N2E2_1770at 2091.905 kb on + strand, within Pf6N2E2_1770at 2091.906 kb on - strand, within Pf6N2E2_1770at 2091.906 kb on - strand, within Pf6N2E2_1770at 2091.906 kb on - strand, within Pf6N2E2_1770at 2091.945 kb on - strand, within Pf6N2E2_1770at 2091.983 kb on + strand, within Pf6N2E2_1770at 2091.993 kb on - strand, within Pf6N2E2_1770at 2091.993 kb on - strand, within Pf6N2E2_1770at 2092.010 kb on + strand, within Pf6N2E2_1770at 2092.010 kb on + strand, within Pf6N2E2_1770at 2092.011 kb on - strand, within Pf6N2E2_1770at 2092.122 kb on - strand, within Pf6N2E2_1770at 2092.217 kb on + strand, within Pf6N2E2_1770at 2092.217 kb on + strand, within Pf6N2E2_1770at 2092.217 kb on + strand, within Pf6N2E2_1770at 2092.217 kb on + strand, within Pf6N2E2_1770at 2092.217 kb on + strand, within Pf6N2E2_1770at 2092.218 kb on - strand, within Pf6N2E2_1770at 2092.266 kb on - strand, within Pf6N2E2_1770at 2092.331 kb on + strandat 2092.365 kb on + strandat 2092.423 kb on + strandat 2092.424 kb on - strandat 2092.532 kb on - strandat 2092.639 kb on - strand, within Pf6N2E2_1771at 2092.641 kb on - strand, within Pf6N2E2_1771at 2092.641 kb on - strand, within Pf6N2E2_1771at 2092.657 kb on - strand, within Pf6N2E2_1771at 2092.668 kb on - strand, within Pf6N2E2_1771at 2092.668 kb on - strand, within Pf6N2E2_1771at 2092.668 kb on - strand, within Pf6N2E2_1771at 2092.668 kb on - strand, within Pf6N2E2_1771at 2092.903 kb on + strand, within Pf6N2E2_1771at 2092.903 kb on + strand, within Pf6N2E2_1771at 2092.904 kb on - strand, within Pf6N2E2_1771at 2093.014 kb on - strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.022 kb on + strand, within Pf6N2E2_1771at 2093.023 kb on - strand, within Pf6N2E2_1771at 2093.023 kb on - strand, within Pf6N2E2_1771at 2093.023 kb on - strand, within Pf6N2E2_1771at 2093.023 kb on - strand, within Pf6N2E2_1771at 2093.049 kb on - strand, within Pf6N2E2_1771at 2093.088 kb on - strand, within Pf6N2E2_1771at 2093.088 kb on - strand, within Pf6N2E2_1771at 2093.088 kb on - strand, within Pf6N2E2_1771at 2093.187 kb on + strand, within Pf6N2E2_1771at 2093.187 kb on + strand, within Pf6N2E2_1771at 2093.188 kb on - strand, within Pf6N2E2_1771at 2093.329 kb on - strand, within Pf6N2E2_1771at 2093.329 kb on - strand, within Pf6N2E2_1771at 2093.556 kb on + strandat 2093.556 kb on + strandat 2093.556 kb on + strandat 2093.557 kb on - strandat 2093.557 kb on - strandat 2093.557 kb on - strandat 2093.557 kb on - strandat 2093.557 kb on - strandat 2093.601 kb on - strandat 2093.601 kb on - strandat 2093.779 kb on - strandat 2093.779 kb on - strandat 2093.825 kb on + strandat 2094.176 kb on - strand, within Pf6N2E2_1772at 2094.176 kb on - strand, within Pf6N2E2_1772at 2094.318 kb on - strand, within Pf6N2E2_1772at 2094.318 kb on - strand, within Pf6N2E2_1772at 2094.412 kb on - strand, within Pf6N2E2_1772

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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2,091,507 - Pf6N2E2_1770 0.13 +0.7
2,091,507 - Pf6N2E2_1770 0.13 -0.9
2,091,729 - Pf6N2E2_1770 0.34 -0.6
2,091,729 - Pf6N2E2_1770 0.34 +1.7
2,091,792 + Pf6N2E2_1770 0.40 +0.7
2,091,792 + Pf6N2E2_1770 0.40 +0.7
2,091,792 + Pf6N2E2_1770 0.40 +1.7
2,091,793 - Pf6N2E2_1770 0.40 -1.9
2,091,793 - Pf6N2E2_1770 0.40 +0.4
2,091,905 + Pf6N2E2_1770 0.50 +2.0
2,091,906 - Pf6N2E2_1770 0.50 +0.1
2,091,906 - Pf6N2E2_1770 0.50 -1.6
2,091,906 - Pf6N2E2_1770 0.50 -0.8
2,091,945 - Pf6N2E2_1770 0.54 +0.9
2,091,983 + Pf6N2E2_1770 0.58 -1.5
2,091,993 - Pf6N2E2_1770 0.58 +1.0
2,091,993 - Pf6N2E2_1770 0.58 +0.5
2,092,010 + Pf6N2E2_1770 0.60 +0.9
2,092,010 + Pf6N2E2_1770 0.60 -0.3
2,092,011 - Pf6N2E2_1770 0.60 +0.1
2,092,122 - Pf6N2E2_1770 0.70 +0.0
2,092,217 + Pf6N2E2_1770 0.79 +1.2
2,092,217 + Pf6N2E2_1770 0.79 +0.1
2,092,217 + Pf6N2E2_1770 0.79 -0.4
2,092,217 + Pf6N2E2_1770 0.79 +2.4
2,092,217 + Pf6N2E2_1770 0.79 -0.3
2,092,218 - Pf6N2E2_1770 0.79 +0.2
2,092,266 - Pf6N2E2_1770 0.84 +1.7
2,092,331 + +0.4
2,092,365 + +1.7
2,092,423 + +0.7
2,092,424 - -0.6
2,092,532 - +0.4
2,092,639 - Pf6N2E2_1771 0.15 -0.3
2,092,641 - Pf6N2E2_1771 0.15 -2.3
2,092,641 - Pf6N2E2_1771 0.15 +0.1
2,092,657 - Pf6N2E2_1771 0.17 +0.7
2,092,668 - Pf6N2E2_1771 0.18 +0.9
2,092,668 - Pf6N2E2_1771 0.18 +0.9
2,092,668 - Pf6N2E2_1771 0.18 +1.1
2,092,668 - Pf6N2E2_1771 0.18 +1.4
2,092,903 + Pf6N2E2_1771 0.42 +1.0
2,092,903 + Pf6N2E2_1771 0.42 +0.7
2,092,904 - Pf6N2E2_1771 0.42 +0.4
2,093,014 - Pf6N2E2_1771 0.53 +0.1
2,093,022 + Pf6N2E2_1771 0.54 +0.3
2,093,022 + Pf6N2E2_1771 0.54 -0.9
2,093,022 + Pf6N2E2_1771 0.54 -0.2
2,093,022 + Pf6N2E2_1771 0.54 -3.2
2,093,022 + Pf6N2E2_1771 0.54 +1.7
2,093,022 + Pf6N2E2_1771 0.54 +2.3
2,093,023 - Pf6N2E2_1771 0.54 +1.2
2,093,023 - Pf6N2E2_1771 0.54 -0.9
2,093,023 - Pf6N2E2_1771 0.54 -0.5
2,093,023 - Pf6N2E2_1771 0.54 +1.2
2,093,049 - Pf6N2E2_1771 0.56 +1.1
2,093,088 - Pf6N2E2_1771 0.60 +0.1
2,093,088 - Pf6N2E2_1771 0.60 +1.8
2,093,088 - Pf6N2E2_1771 0.60 -0.6
2,093,187 + Pf6N2E2_1771 0.71 +2.7
2,093,187 + Pf6N2E2_1771 0.71 -0.6
2,093,188 - Pf6N2E2_1771 0.71 +0.7
2,093,329 - Pf6N2E2_1771 0.85 +1.0
2,093,329 - Pf6N2E2_1771 0.85 +0.7
2,093,556 + -0.3
2,093,556 + +0.7
2,093,556 + -0.1
2,093,557 - +0.3
2,093,557 - -0.0
2,093,557 - +0.4
2,093,557 - -0.5
2,093,557 - -0.3
2,093,601 - -0.6
2,093,601 - +0.2
2,093,779 - +0.3
2,093,779 - +0.1
2,093,825 + -1.5
2,094,176 - Pf6N2E2_1772 0.22 -0.6
2,094,176 - Pf6N2E2_1772 0.22 +0.3
2,094,318 - Pf6N2E2_1772 0.27 +0.4
2,094,318 - Pf6N2E2_1772 0.27 +0.4
2,094,412 - Pf6N2E2_1772 0.30 +0.0

Or see this region's nucleotide sequence