Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1751

Experiment: Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1750 and Pf6N2E2_1751 are separated by 64 nucleotidesPf6N2E2_1751 and Pf6N2E2_1752 are separated by 62 nucleotides Pf6N2E2_1750 - Sigma-54 dependent transcriptional regulator, at 2,063,866 to 2,065,788 _1750 Pf6N2E2_1751 - Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21), at 2,065,853 to 2,067,286 _1751 Pf6N2E2_1752 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 2,067,349 to 2,069,529 _1752 Position (kb) 2065 2066 2067 2068Strain fitness (log2 ratio) -2 -1 0 1 2at 2065.092 kb on + strand, within Pf6N2E2_1750at 2065.308 kb on + strand, within Pf6N2E2_1750at 2065.308 kb on + strand, within Pf6N2E2_1750at 2065.309 kb on - strand, within Pf6N2E2_1750at 2065.309 kb on - strand, within Pf6N2E2_1750at 2065.610 kb on - strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.866 kb on + strandat 2065.867 kb on - strandat 2065.893 kb on + strandat 2065.985 kb on - strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.986 kb on + strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2065.987 kb on - strandat 2066.047 kb on - strand, within Pf6N2E2_1751at 2066.243 kb on - strand, within Pf6N2E2_1751at 2066.782 kb on + strand, within Pf6N2E2_1751at 2066.955 kb on + strand, within Pf6N2E2_1751at 2066.955 kb on + strand, within Pf6N2E2_1751at 2066.955 kb on + strand, within Pf6N2E2_1751at 2066.956 kb on - strand, within Pf6N2E2_1751at 2066.956 kb on - strand, within Pf6N2E2_1751at 2067.084 kb on + strand, within Pf6N2E2_1751at 2067.085 kb on - strand, within Pf6N2E2_1751at 2067.261 kb on + strandat 2067.270 kb on + strandat 2067.271 kb on - strandat 2067.350 kb on + strandat 2067.350 kb on + strandat 2067.351 kb on - strandat 2067.419 kb on + strandat 2067.420 kb on - strandat 2067.420 kb on - strandat 2067.451 kb on - strandat 2067.608 kb on + strand, within Pf6N2E2_1752at 2067.608 kb on + strand, within Pf6N2E2_1752at 2067.720 kb on - strand, within Pf6N2E2_1752at 2067.720 kb on - strand, within Pf6N2E2_1752at 2067.818 kb on + strand, within Pf6N2E2_1752at 2067.839 kb on + strand, within Pf6N2E2_1752at 2067.839 kb on + strand, within Pf6N2E2_1752at 2067.840 kb on - strand, within Pf6N2E2_1752at 2067.840 kb on - strand, within Pf6N2E2_1752at 2067.840 kb on - strand, within Pf6N2E2_1752at 2067.991 kb on + strand, within Pf6N2E2_1752at 2067.991 kb on + strand, within Pf6N2E2_1752at 2067.992 kb on - strand, within Pf6N2E2_1752at 2068.124 kb on + strand, within Pf6N2E2_1752at 2068.125 kb on - strand, within Pf6N2E2_1752at 2068.125 kb on - strand, within Pf6N2E2_1752at 2068.173 kb on - strand, within Pf6N2E2_1752at 2068.200 kb on + strand, within Pf6N2E2_1752at 2068.202 kb on + strand, within Pf6N2E2_1752at 2068.202 kb on + strand, within Pf6N2E2_1752at 2068.203 kb on - strand, within Pf6N2E2_1752at 2068.226 kb on + strand, within Pf6N2E2_1752at 2068.226 kb on + strand, within Pf6N2E2_1752

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
remove
2,065,092 + Pf6N2E2_1750 0.64 +2.1
2,065,308 + Pf6N2E2_1750 0.75 -0.3
2,065,308 + Pf6N2E2_1750 0.75 +1.7
2,065,309 - Pf6N2E2_1750 0.75 -0.3
2,065,309 - Pf6N2E2_1750 0.75 -1.2
2,065,610 - +0.9
2,065,866 + +0.7
2,065,866 + +1.3
2,065,866 + -1.0
2,065,866 + -1.5
2,065,867 - +0.1
2,065,893 + +1.7
2,065,985 - +1.3
2,065,986 + +0.7
2,065,986 + -0.6
2,065,986 + +1.5
2,065,986 + -0.9
2,065,986 + +0.7
2,065,987 - +0.7
2,065,987 - +0.1
2,065,987 - -0.0
2,065,987 - -0.9
2,065,987 - +0.7
2,065,987 - -0.2
2,065,987 - +0.0
2,065,987 - -2.0
2,066,047 - Pf6N2E2_1751 0.14 -1.1
2,066,243 - Pf6N2E2_1751 0.27 -0.4
2,066,782 + Pf6N2E2_1751 0.65 -0.5
2,066,955 + Pf6N2E2_1751 0.77 -1.1
2,066,955 + Pf6N2E2_1751 0.77 +0.4
2,066,955 + Pf6N2E2_1751 0.77 +0.7
2,066,956 - Pf6N2E2_1751 0.77 -1.5
2,066,956 - Pf6N2E2_1751 0.77 +0.2
2,067,084 + Pf6N2E2_1751 0.86 -1.1
2,067,085 - Pf6N2E2_1751 0.86 -0.3
2,067,261 + +0.7
2,067,270 + +0.7
2,067,271 - -1.5
2,067,350 + +0.1
2,067,350 + +0.5
2,067,351 - +0.5
2,067,419 + -1.2
2,067,420 - -0.6
2,067,420 - +0.5
2,067,451 - +0.7
2,067,608 + Pf6N2E2_1752 0.12 -0.3
2,067,608 + Pf6N2E2_1752 0.12 -1.3
2,067,720 - Pf6N2E2_1752 0.17 +1.7
2,067,720 - Pf6N2E2_1752 0.17 -0.6
2,067,818 + Pf6N2E2_1752 0.22 +0.6
2,067,839 + Pf6N2E2_1752 0.22 -1.0
2,067,839 + Pf6N2E2_1752 0.22 -0.6
2,067,840 - Pf6N2E2_1752 0.23 +1.3
2,067,840 - Pf6N2E2_1752 0.23 +0.7
2,067,840 - Pf6N2E2_1752 0.23 +0.7
2,067,991 + Pf6N2E2_1752 0.29 +1.0
2,067,991 + Pf6N2E2_1752 0.29 +0.5
2,067,992 - Pf6N2E2_1752 0.29 -1.4
2,068,124 + Pf6N2E2_1752 0.36 -0.2
2,068,125 - Pf6N2E2_1752 0.36 +0.1
2,068,125 - Pf6N2E2_1752 0.36 +2.0
2,068,173 - Pf6N2E2_1752 0.38 +1.7
2,068,200 + Pf6N2E2_1752 0.39 -0.8
2,068,202 + Pf6N2E2_1752 0.39 +0.9
2,068,202 + Pf6N2E2_1752 0.39 -0.9
2,068,203 - Pf6N2E2_1752 0.39 -0.6
2,068,226 + Pf6N2E2_1752 0.40 +0.7
2,068,226 + Pf6N2E2_1752 0.40 -0.5

Or see this region's nucleotide sequence