Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1155 and Pf6N2E2_1156 overlap by 29 nucleotides Pf6N2E2_1156 and Pf6N2E2_1157 are separated by 39 nucleotides Pf6N2E2_1157 and Pf6N2E2_1158 are separated by 92 nucleotides
Pf6N2E2_1155 - Cyn operon transcriptional activator, at 1,352,699 to 1,353,706
_1155
Pf6N2E2_1156 - hypothetical protein, at 1,353,678 to 1,354,211
_1156
Pf6N2E2_1157 - hypothetical protein possibly connected to lactam utilization and allophanate hydrolase, at 1,354,251 to 1,355,042
_1157
Pf6N2E2_1158 - Cyn operon transcriptional activator, at 1,355,135 to 1,356,082
_1158
Position (kb)
1353
1354
1355 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1353.053 kb on + strand, within Pf6N2E2_1155 at 1353.087 kb on + strand, within Pf6N2E2_1155 at 1353.088 kb on - strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.420 kb on + strand, within Pf6N2E2_1155 at 1353.421 kb on - strand, within Pf6N2E2_1155 at 1353.889 kb on + strand, within Pf6N2E2_1156 at 1353.890 kb on - strand, within Pf6N2E2_1156 at 1353.890 kb on - strand, within Pf6N2E2_1156 at 1354.003 kb on + strand, within Pf6N2E2_1156 at 1354.130 kb on + strand, within Pf6N2E2_1156 at 1354.130 kb on + strand, within Pf6N2E2_1156 at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.181 kb on - strand at 1354.253 kb on - strand at 1354.270 kb on - strand at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.408 kb on + strand, within Pf6N2E2_1157 at 1354.461 kb on + strand, within Pf6N2E2_1157 at 1354.762 kb on + strand, within Pf6N2E2_1157 at 1354.779 kb on + strand, within Pf6N2E2_1157 at 1354.780 kb on - strand, within Pf6N2E2_1157 at 1354.973 kb on - strand at 1355.109 kb on + strand at 1355.109 kb on + strand at 1355.130 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,353,053 + Pf6N2E2_1155 0.35 -2.3 1,353,087 + Pf6N2E2_1155 0.38 -0.7 1,353,088 - Pf6N2E2_1155 0.39 +1.1 1,353,158 + Pf6N2E2_1155 0.46 -0.1 1,353,158 + Pf6N2E2_1155 0.46 +0.5 1,353,158 + Pf6N2E2_1155 0.46 +1.8 1,353,158 + Pf6N2E2_1155 0.46 +0.3 1,353,159 - Pf6N2E2_1155 0.46 -0.9 1,353,159 - Pf6N2E2_1155 0.46 -0.1 1,353,159 - Pf6N2E2_1155 0.46 +0.9 1,353,159 - Pf6N2E2_1155 0.46 -0.5 1,353,159 - Pf6N2E2_1155 0.46 +2.5 1,353,420 + Pf6N2E2_1155 0.72 -0.7 1,353,421 - Pf6N2E2_1155 0.72 +0.9 1,353,889 + Pf6N2E2_1156 0.40 -1.1 1,353,890 - Pf6N2E2_1156 0.40 -0.7 1,353,890 - Pf6N2E2_1156 0.40 +0.5 1,354,003 + Pf6N2E2_1156 0.61 -1.1 1,354,130 + Pf6N2E2_1156 0.85 +0.5 1,354,130 + Pf6N2E2_1156 0.85 -0.3 1,354,180 + -0.5 1,354,180 + -0.0 1,354,180 + -1.0 1,354,181 - -0.5 1,354,253 - -0.2 1,354,270 - +2.2 1,354,350 + Pf6N2E2_1157 0.12 -0.1 1,354,350 + Pf6N2E2_1157 0.12 +1.1 1,354,408 + Pf6N2E2_1157 0.20 -0.5 1,354,461 + Pf6N2E2_1157 0.27 +0.0 1,354,762 + Pf6N2E2_1157 0.65 -0.0 1,354,779 + Pf6N2E2_1157 0.67 +0.0 1,354,780 - Pf6N2E2_1157 0.67 -1.1 1,354,973 - -1.5 1,355,109 + +0.8 1,355,109 + +0.4 1,355,130 - +0.5
Or see this region's nucleotide sequence