Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03630 and HSERO_RS03635 are separated by 62 nucleotides HSERO_RS03635 and HSERO_RS03640 are separated by 97 nucleotides
HSERO_RS03630: HSERO_RS03630 - fructose transporter, at 792,804 to 793,421
_RS03630
HSERO_RS03635: HSERO_RS03635 - D-mannose ABC transporter, substrate-binding component <small>(from data)</small>, at 793,484 to 794,434
_RS03635
HSERO_RS03640: HSERO_RS03640 - D-mannose ABC transporter, ATPase component <small>(from data)</small>, at 794,532 to 796,037
_RS03640
Position (kb) 793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 792.872 kb on - strand, within HSERO_RS03630 at 792.909 kb on + strand, within HSERO_RS03630 at 792.916 kb on - strand, within HSERO_RS03630 at 792.916 kb on - strand, within HSERO_RS03630 at 793.165 kb on - strand, within HSERO_RS03630 at 793.177 kb on - strand, within HSERO_RS03630 at 793.326 kb on - strand, within HSERO_RS03630 at 793.349 kb on - strand, within HSERO_RS03630 at 793.437 kb on + strand at 793.507 kb on + strand at 793.544 kb on - strand at 793.790 kb on - strand, within HSERO_RS03635 at 793.861 kb on + strand, within HSERO_RS03635 at 793.959 kb on - strand, within HSERO_RS03635 at 794.570 kb on - strand at 794.687 kb on + strand, within HSERO_RS03640 at 794.704 kb on - strand, within HSERO_RS03640 at 794.823 kb on + strand, within HSERO_RS03640 at 794.827 kb on + strand, within HSERO_RS03640 at 795.026 kb on - strand, within HSERO_RS03640 at 795.055 kb on + strand, within HSERO_RS03640 at 795.097 kb on - strand, within HSERO_RS03640 at 795.379 kb on + strand, within HSERO_RS03640 at 795.387 kb on - strand, within HSERO_RS03640 at 795.402 kb on + strand, within HSERO_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 792,872 - HSERO_RS03630 0.11 -0.7 792,909 + HSERO_RS03630 0.17 +0.3 792,916 - HSERO_RS03630 0.18 +0.2 792,916 - HSERO_RS03630 0.18 +0.2 793,165 - HSERO_RS03630 0.58 +0.8 793,177 - HSERO_RS03630 0.60 -0.5 793,326 - HSERO_RS03630 0.84 -0.0 793,349 - HSERO_RS03630 0.88 -2.3 793,437 + -0.5 793,507 + +1.0 793,544 - -1.3 793,790 - HSERO_RS03635 0.32 +4.2 793,861 + HSERO_RS03635 0.40 -0.1 793,959 - HSERO_RS03635 0.50 -0.3 794,570 - +0.5 794,687 + HSERO_RS03640 0.10 -0.3 794,704 - HSERO_RS03640 0.11 +0.2 794,823 + HSERO_RS03640 0.19 +0.2 794,827 + HSERO_RS03640 0.20 +0.3 795,026 - HSERO_RS03640 0.33 +0.1 795,055 + HSERO_RS03640 0.35 +0.3 795,097 - HSERO_RS03640 0.38 +1.1 795,379 + HSERO_RS03640 0.56 +1.8 795,387 - HSERO_RS03640 0.57 -0.2 795,402 + HSERO_RS03640 0.58 -1.0
Or see this region's nucleotide sequence