Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22680 and HSERO_RS22685 are separated by 57 nucleotides HSERO_RS22685 and HSERO_RS22690 are separated by 166 nucleotides
HSERO_RS22680: HSERO_RS22680 - histidine ammonia-lyase, at 5,200,855 to 5,202,483
_RS22680
HSERO_RS22685: HSERO_RS22685 - allantoate amidohydrolase, at 5,202,541 to 5,203,794
_RS22685
HSERO_RS22690: HSERO_RS22690 - C4-dicarboxylate ABC transporter, at 5,203,961 to 5,205,295
_RS22690
Position (kb) 5202
5203
5204 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5201.584 kb on - strand, within HSERO_RS22680 at 5201.608 kb on - strand, within HSERO_RS22680 at 5201.635 kb on - strand, within HSERO_RS22680 at 5201.637 kb on + strand, within HSERO_RS22680 at 5201.677 kb on + strand, within HSERO_RS22680 at 5201.731 kb on + strand, within HSERO_RS22680 at 5201.736 kb on + strand, within HSERO_RS22680 at 5201.748 kb on + strand, within HSERO_RS22680 at 5201.812 kb on + strand, within HSERO_RS22680 at 5201.912 kb on + strand, within HSERO_RS22680 at 5201.927 kb on + strand, within HSERO_RS22680 at 5201.989 kb on - strand, within HSERO_RS22680 at 5202.030 kb on - strand, within HSERO_RS22680 at 5202.132 kb on + strand at 5202.232 kb on + strand, within HSERO_RS22680 at 5202.242 kb on + strand, within HSERO_RS22680 at 5202.412 kb on - strand at 5202.412 kb on - strand at 5202.424 kb on + strand at 5202.518 kb on - strand at 5202.568 kb on + strand at 5202.666 kb on - strand at 5202.900 kb on + strand, within HSERO_RS22685 at 5202.969 kb on + strand, within HSERO_RS22685 at 5203.002 kb on + strand, within HSERO_RS22685 at 5203.182 kb on + strand, within HSERO_RS22685 at 5203.229 kb on - strand, within HSERO_RS22685 at 5203.371 kb on - strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.376 kb on + strand, within HSERO_RS22685 at 5203.482 kb on - strand, within HSERO_RS22685 at 5203.525 kb on + strand, within HSERO_RS22685 at 5203.625 kb on + strand, within HSERO_RS22685 at 5203.675 kb on - strand at 5203.720 kb on + strand at 5203.728 kb on - strand at 5203.728 kb on - strand at 5203.744 kb on + strand at 5203.744 kb on + strand at 5203.802 kb on + strand at 5203.953 kb on + strand at 5203.953 kb on + strand at 5204.006 kb on - strand at 5204.006 kb on - strand at 5204.006 kb on - strand at 5204.040 kb on - strand at 5204.137 kb on - strand, within HSERO_RS22690 at 5204.277 kb on - strand, within HSERO_RS22690 at 5204.289 kb on + strand, within HSERO_RS22690 at 5204.306 kb on - strand, within HSERO_RS22690 at 5204.387 kb on + strand, within HSERO_RS22690 at 5204.441 kb on + strand, within HSERO_RS22690 at 5204.563 kb on - strand, within HSERO_RS22690
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,201,584 - HSERO_RS22680 0.45 +0.1 5,201,608 - HSERO_RS22680 0.46 +0.4 5,201,635 - HSERO_RS22680 0.48 -0.7 5,201,637 + HSERO_RS22680 0.48 +1.0 5,201,677 + HSERO_RS22680 0.50 +0.1 5,201,731 + HSERO_RS22680 0.54 -0.3 5,201,736 + HSERO_RS22680 0.54 -0.6 5,201,748 + HSERO_RS22680 0.55 +0.2 5,201,812 + HSERO_RS22680 0.59 +0.2 5,201,912 + HSERO_RS22680 0.65 +0.3 5,201,927 + HSERO_RS22680 0.66 +0.0 5,201,989 - HSERO_RS22680 0.70 -0.5 5,202,030 - HSERO_RS22680 0.72 +0.0 5,202,132 + +0.3 5,202,232 + HSERO_RS22680 0.85 -0.5 5,202,242 + HSERO_RS22680 0.85 -0.4 5,202,412 - -0.5 5,202,412 - -0.2 5,202,424 + -0.3 5,202,518 - -0.4 5,202,568 + +0.3 5,202,666 - -0.6 5,202,900 + HSERO_RS22685 0.29 +1.4 5,202,969 + HSERO_RS22685 0.34 -0.0 5,203,002 + HSERO_RS22685 0.37 +0.7 5,203,182 + HSERO_RS22685 0.51 +0.3 5,203,229 - HSERO_RS22685 0.55 -0.7 5,203,371 - HSERO_RS22685 0.66 +1.1 5,203,376 + HSERO_RS22685 0.67 +0.1 5,203,376 + HSERO_RS22685 0.67 +0.3 5,203,482 - HSERO_RS22685 0.75 +0.9 5,203,525 + HSERO_RS22685 0.78 -1.0 5,203,625 + HSERO_RS22685 0.86 +4.8 5,203,675 - +0.8 5,203,720 + -0.6 5,203,728 - +0.4 5,203,728 - -0.9 5,203,744 + +1.2 5,203,744 + -0.0 5,203,802 + +1.6 5,203,953 + +0.2 5,203,953 + +0.3 5,204,006 - +0.5 5,204,006 - -0.0 5,204,006 - +0.3 5,204,040 - -0.2 5,204,137 - HSERO_RS22690 0.13 +0.6 5,204,277 - HSERO_RS22690 0.24 +1.0 5,204,289 + HSERO_RS22690 0.25 -0.3 5,204,306 - HSERO_RS22690 0.26 -0.2 5,204,387 + HSERO_RS22690 0.32 -0.5 5,204,441 + HSERO_RS22690 0.36 +1.5 5,204,563 - HSERO_RS22690 0.45 -2.2
Or see this region's nucleotide sequence