Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23535 and HSERO_RS23540 are separated by 22 nucleotides HSERO_RS23540 and HSERO_RS23545 are separated by 139 nucleotides HSERO_RS23545 and HSERO_RS23550 are separated by 339 nucleotides
HSERO_RS23535: HSERO_RS23535 - acyl-CoA synthetase, at 5,395,738 to 5,397,378
_RS23535
HSERO_RS23540: HSERO_RS23540 - molybdopterin-dependent oxidoreductase, at 5,397,401 to 5,397,994
_RS23540
HSERO_RS23545: HSERO_RS23545 - sodium transporter, at 5,398,134 to 5,399,048
_RS23545
HSERO_RS23550: HSERO_RS23550 - ABC transporter ATP-binding protein, at 5,399,388 to 5,401,055
_RS23550
Position (kb) 5398
5399
5400 Strain fitness (log2 ratio) -2
-1
0
1 at 5397.224 kb on + strand at 5397.263 kb on + strand at 5397.271 kb on - strand at 5397.271 kb on - strand at 5397.287 kb on + strand at 5397.300 kb on + strand at 5397.407 kb on - strand at 5397.607 kb on - strand, within HSERO_RS23540 at 5397.779 kb on + strand, within HSERO_RS23540 at 5397.780 kb on + strand, within HSERO_RS23540 at 5397.787 kb on - strand, within HSERO_RS23540 at 5397.788 kb on - strand, within HSERO_RS23540 at 5397.788 kb on - strand, within HSERO_RS23540 at 5397.889 kb on - strand, within HSERO_RS23540 at 5398.127 kb on + strand at 5398.130 kb on + strand at 5398.191 kb on + strand at 5398.377 kb on + strand, within HSERO_RS23545 at 5398.555 kb on + strand, within HSERO_RS23545 at 5398.839 kb on - strand, within HSERO_RS23545 at 5398.983 kb on + strand at 5399.064 kb on + strand at 5399.069 kb on + strand at 5399.072 kb on - strand at 5399.072 kb on - strand at 5399.072 kb on - strand at 5399.148 kb on + strand at 5399.275 kb on - strand at 5399.342 kb on - strand at 5399.424 kb on - strand at 5399.637 kb on + strand, within HSERO_RS23550 at 5399.769 kb on + strand, within HSERO_RS23550 at 5399.776 kb on - strand, within HSERO_RS23550 at 5399.777 kb on - strand, within HSERO_RS23550
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,397,224 + -0.0 5,397,263 + -0.2 5,397,271 - -0.9 5,397,271 - -1.0 5,397,287 + -0.9 5,397,300 + +0.7 5,397,407 - +0.3 5,397,607 - HSERO_RS23540 0.35 -0.7 5,397,779 + HSERO_RS23540 0.64 +0.1 5,397,780 + HSERO_RS23540 0.64 +0.1 5,397,787 - HSERO_RS23540 0.65 +0.1 5,397,788 - HSERO_RS23540 0.65 +0.0 5,397,788 - HSERO_RS23540 0.65 +0.1 5,397,889 - HSERO_RS23540 0.82 +0.1 5,398,127 + -1.5 5,398,130 + -0.6 5,398,191 + -0.3 5,398,377 + HSERO_RS23545 0.27 +1.3 5,398,555 + HSERO_RS23545 0.46 +0.3 5,398,839 - HSERO_RS23545 0.77 +0.3 5,398,983 + -0.7 5,399,064 + +0.1 5,399,069 + -0.1 5,399,072 - +0.8 5,399,072 - +0.4 5,399,072 - -1.1 5,399,148 + +0.5 5,399,275 - -0.3 5,399,342 - -1.9 5,399,424 - -0.8 5,399,637 + HSERO_RS23550 0.15 +0.2 5,399,769 + HSERO_RS23550 0.23 +0.1 5,399,776 - HSERO_RS23550 0.23 +0.2 5,399,777 - HSERO_RS23550 0.23 +0.2
Or see this region's nucleotide sequence