Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23025 and HSERO_RS23030 are separated by 58 nucleotides HSERO_RS23030 and HSERO_RS23035 overlap by 4 nucleotides HSERO_RS23035 and HSERO_RS23040 are separated by 217 nucleotides
HSERO_RS23025: HSERO_RS23025 - phosphate ABC transporter ATP-binding protein, at 5,281,843 to 5,282,562
_RS23025
HSERO_RS23030: HSERO_RS23030 - amino acid ABC transporter permease, at 5,282,621 to 5,283,274
_RS23030
HSERO_RS23035: HSERO_RS23035 - ABC transporter permease, at 5,283,271 to 5,284,104
_RS23035
HSERO_RS23040: HSERO_RS23040 - D-galacturonate dehydrogenase (EC 1.1.1.203) <small>(from data)</small>, at 5,284,322 to 5,285,176
_RS23040
Position (kb) 5283
5284
5285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5282.292 kb on - strand, within HSERO_RS23025 at 5282.303 kb on - strand, within HSERO_RS23025 at 5282.349 kb on + strand, within HSERO_RS23025 at 5282.352 kb on - strand, within HSERO_RS23025 at 5282.385 kb on + strand, within HSERO_RS23025 at 5282.416 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.431 kb on - strand, within HSERO_RS23025 at 5282.446 kb on + strand, within HSERO_RS23025 at 5282.634 kb on + strand at 5282.674 kb on + strand at 5282.676 kb on + strand at 5282.676 kb on + strand at 5282.684 kb on - strand at 5282.684 kb on - strand at 5282.692 kb on + strand, within HSERO_RS23030 at 5282.755 kb on + strand, within HSERO_RS23030 at 5282.913 kb on + strand, within HSERO_RS23030 at 5282.936 kb on + strand, within HSERO_RS23030 at 5283.041 kb on - strand, within HSERO_RS23030 at 5283.084 kb on + strand, within HSERO_RS23030 at 5283.356 kb on - strand, within HSERO_RS23035 at 5283.399 kb on + strand, within HSERO_RS23035 at 5283.433 kb on + strand, within HSERO_RS23035 at 5283.451 kb on + strand, within HSERO_RS23035 at 5283.511 kb on + strand, within HSERO_RS23035 at 5283.581 kb on + strand, within HSERO_RS23035 at 5283.727 kb on + strand, within HSERO_RS23035 at 5283.727 kb on + strand, within HSERO_RS23035 at 5283.886 kb on + strand, within HSERO_RS23035 at 5283.967 kb on - strand, within HSERO_RS23035 at 5284.022 kb on + strand at 5284.030 kb on - strand at 5284.162 kb on + strand at 5284.370 kb on + strand at 5284.409 kb on - strand, within HSERO_RS23040 at 5284.409 kb on - strand, within HSERO_RS23040 at 5284.421 kb on - strand, within HSERO_RS23040 at 5284.455 kb on + strand, within HSERO_RS23040 at 5284.473 kb on + strand, within HSERO_RS23040 at 5284.677 kb on + strand, within HSERO_RS23040 at 5284.685 kb on - strand, within HSERO_RS23040 at 5284.685 kb on - strand, within HSERO_RS23040 at 5284.982 kb on + strand, within HSERO_RS23040
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,282,292 - HSERO_RS23025 0.62 +0.2 5,282,303 - HSERO_RS23025 0.64 -1.1 5,282,349 + HSERO_RS23025 0.70 -0.8 5,282,352 - HSERO_RS23025 0.71 -0.7 5,282,385 + HSERO_RS23025 0.75 +0.1 5,282,416 - HSERO_RS23025 0.80 -0.0 5,282,431 - HSERO_RS23025 0.82 -0.7 5,282,431 - HSERO_RS23025 0.82 +0.1 5,282,446 + HSERO_RS23025 0.84 +1.3 5,282,634 + +0.7 5,282,674 + +1.0 5,282,676 + +0.7 5,282,676 + -0.2 5,282,684 - +0.1 5,282,684 - -0.1 5,282,692 + HSERO_RS23030 0.11 -0.3 5,282,755 + HSERO_RS23030 0.20 -0.1 5,282,913 + HSERO_RS23030 0.45 -1.0 5,282,936 + HSERO_RS23030 0.48 +0.5 5,283,041 - HSERO_RS23030 0.64 -0.0 5,283,084 + HSERO_RS23030 0.71 +1.3 5,283,356 - HSERO_RS23035 0.10 +0.7 5,283,399 + HSERO_RS23035 0.15 +0.3 5,283,433 + HSERO_RS23035 0.19 +1.2 5,283,451 + HSERO_RS23035 0.22 +1.0 5,283,511 + HSERO_RS23035 0.29 +0.1 5,283,581 + HSERO_RS23035 0.37 -0.9 5,283,727 + HSERO_RS23035 0.55 -0.2 5,283,727 + HSERO_RS23035 0.55 +0.5 5,283,886 + HSERO_RS23035 0.74 +4.4 5,283,967 - HSERO_RS23035 0.83 +2.8 5,284,022 + +1.1 5,284,030 - +0.1 5,284,162 + -1.3 5,284,370 + -0.2 5,284,409 - HSERO_RS23040 0.10 +0.5 5,284,409 - HSERO_RS23040 0.10 +0.4 5,284,421 - HSERO_RS23040 0.12 -0.1 5,284,455 + HSERO_RS23040 0.16 +1.2 5,284,473 + HSERO_RS23040 0.18 -0.4 5,284,677 + HSERO_RS23040 0.42 +0.9 5,284,685 - HSERO_RS23040 0.42 +0.9 5,284,685 - HSERO_RS23040 0.42 -0.8 5,284,982 + HSERO_RS23040 0.77 -3.1
Or see this region's nucleotide sequence