Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22960

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS22955 and HSERO_RS22960 are separated by 122 nucleotidesHSERO_RS22960 and HSERO_RS22965 are separated by 125 nucleotidesHSERO_RS22965 and HSERO_RS22970 are separated by 15 nucleotides HSERO_RS22955: HSERO_RS22955 - D-amino acid dehydrogenase, at 5,267,393 to 5,268,679 _RS22955 HSERO_RS22960: HSERO_RS22960 - glyoxalase, at 5,268,802 to 5,269,188 _RS22960 HSERO_RS22965: HSERO_RS22965 - activator of HSP90 ATPase, at 5,269,314 to 5,269,769 _RS22965 HSERO_RS22970: HSERO_RS22970 - membrane protein, at 5,269,785 to 5,271,455 _RS22970 Position (kb) 5268 5269 5270Strain fitness (log2 ratio) -1 0 1 2 3at 5267.815 kb on + strand, within HSERO_RS22955at 5267.911 kb on - strand, within HSERO_RS22955at 5268.191 kb on - strand, within HSERO_RS22955at 5268.246 kb on - strand, within HSERO_RS22955at 5268.632 kb on + strandat 5268.759 kb on - strandat 5268.791 kb on - strandat 5269.057 kb on + strand, within HSERO_RS22960at 5269.186 kb on - strandat 5269.319 kb on - strandat 5269.319 kb on - strandat 5269.319 kb on - strandat 5269.330 kb on - strandat 5269.355 kb on - strandat 5269.559 kb on + strand, within HSERO_RS22965at 5269.780 kb on - strandat 5269.810 kb on + strandat 5269.942 kb on - strandat 5269.969 kb on - strand, within HSERO_RS22970at 5270.006 kb on - strand, within HSERO_RS22970at 5270.055 kb on + strand, within HSERO_RS22970

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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5,267,815 + HSERO_RS22955 0.33 +0.3
5,267,911 - HSERO_RS22955 0.40 -0.6
5,268,191 - HSERO_RS22955 0.62 +0.1
5,268,246 - HSERO_RS22955 0.66 +0.8
5,268,632 + +0.9
5,268,759 - +0.3
5,268,791 - +2.3
5,269,057 + HSERO_RS22960 0.66 +2.7
5,269,186 - -0.7
5,269,319 - -0.8
5,269,319 - -0.5
5,269,319 - +0.3
5,269,330 - -0.3
5,269,355 - +0.0
5,269,559 + HSERO_RS22965 0.54 +0.4
5,269,780 - +0.8
5,269,810 + -0.7
5,269,942 - +0.8
5,269,969 - HSERO_RS22970 0.11 +3.4
5,270,006 - HSERO_RS22970 0.13 +1.6
5,270,055 + HSERO_RS22970 0.16 +0.5

Or see this region's nucleotide sequence