Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22615 and HSERO_RS22620 are separated by 82 nucleotides HSERO_RS22620 and HSERO_RS22625 are separated by 181 nucleotides HSERO_RS22625 and HSERO_RS22630 are separated by 485 nucleotides
HSERO_RS22615: HSERO_RS22615 - transcriptional regulator, at 5,185,063 to 5,185,701
_RS22615
HSERO_RS22620: HSERO_RS22620 - membrane protein, at 5,185,784 to 5,186,236
_RS22620
HSERO_RS22625: HSERO_RS22625 - LysR family transcriptional regulator, at 5,186,418 to 5,187,323
_RS22625
HSERO_RS22630: HSERO_RS22630 - 3-hydroxyacyl-CoA dehydrogenase, at 5,187,809 to 5,188,762
_RS22630
Position (kb) 5186
5187
5188 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 5185.565 kb on + strand, within HSERO_RS22615 at 5185.638 kb on - strand at 5185.874 kb on + strand, within HSERO_RS22620 at 5185.874 kb on + strand, within HSERO_RS22620 at 5186.169 kb on - strand, within HSERO_RS22620 at 5186.178 kb on + strand, within HSERO_RS22620 at 5186.213 kb on - strand at 5186.421 kb on + strand at 5186.535 kb on - strand, within HSERO_RS22625 at 5186.810 kb on + strand, within HSERO_RS22625 at 5187.373 kb on - strand at 5187.455 kb on - strand at 5187.495 kb on + strand at 5187.517 kb on + strand at 5187.702 kb on - strand at 5187.733 kb on + strand at 5187.822 kb on - strand at 5187.822 kb on - strand at 5187.918 kb on - strand, within HSERO_RS22630 at 5187.919 kb on - strand, within HSERO_RS22630 at 5187.975 kb on - strand, within HSERO_RS22630 at 5188.079 kb on - strand, within HSERO_RS22630 at 5188.094 kb on + strand, within HSERO_RS22630 at 5188.114 kb on + strand, within HSERO_RS22630 at 5188.144 kb on + strand, within HSERO_RS22630 at 5188.152 kb on - strand, within HSERO_RS22630 at 5188.153 kb on - strand, within HSERO_RS22630 at 5188.204 kb on - strand, within HSERO_RS22630 at 5188.304 kb on - strand, within HSERO_RS22630 at 5188.316 kb on - strand, within HSERO_RS22630
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,185,565 + HSERO_RS22615 0.79 -1.7 5,185,638 - +1.2 5,185,874 + HSERO_RS22620 0.20 +0.1 5,185,874 + HSERO_RS22620 0.20 -0.4 5,186,169 - HSERO_RS22620 0.85 -0.4 5,186,178 + HSERO_RS22620 0.87 +0.6 5,186,213 - -0.3 5,186,421 + +0.7 5,186,535 - HSERO_RS22625 0.13 +7.3 5,186,810 + HSERO_RS22625 0.43 -0.5 5,187,373 - -0.7 5,187,455 - -0.4 5,187,495 + +0.2 5,187,517 + +0.5 5,187,702 - +0.0 5,187,733 + +0.5 5,187,822 - +0.2 5,187,822 - -0.9 5,187,918 - HSERO_RS22630 0.11 -0.1 5,187,919 - HSERO_RS22630 0.12 -0.3 5,187,975 - HSERO_RS22630 0.17 -0.0 5,188,079 - HSERO_RS22630 0.28 -1.3 5,188,094 + HSERO_RS22630 0.30 +0.0 5,188,114 + HSERO_RS22630 0.32 +0.3 5,188,144 + HSERO_RS22630 0.35 +0.4 5,188,152 - HSERO_RS22630 0.36 +0.3 5,188,153 - HSERO_RS22630 0.36 -0.4 5,188,204 - HSERO_RS22630 0.41 -0.4 5,188,304 - HSERO_RS22630 0.52 +0.5 5,188,316 - HSERO_RS22630 0.53 -0.4
Or see this region's nucleotide sequence