Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22405 and HSERO_RS22410 are separated by 10 nucleotides HSERO_RS22410 and HSERO_RS22415 are separated by 92 nucleotides HSERO_RS22415 and HSERO_RS22420 are separated by 12 nucleotides
HSERO_RS22405: HSERO_RS22405 - membrane protein, at 5,127,474 to 5,129,948
_RS22405
HSERO_RS22410: HSERO_RS22410 - alpha/beta hydrolase, at 5,129,959 to 5,130,744
_RS22410
HSERO_RS22415: HSERO_RS22415 - hypothetical protein, at 5,130,837 to 5,131,145
_RS22415
HSERO_RS22420: HSERO_RS22420 - azoreductase, at 5,131,158 to 5,131,784
_RS22420
Position (kb) 5129
5130
5131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5129.230 kb on + strand, within HSERO_RS22405 at 5129.347 kb on - strand, within HSERO_RS22405 at 5129.361 kb on - strand, within HSERO_RS22405 at 5129.361 kb on - strand, within HSERO_RS22405 at 5129.361 kb on - strand, within HSERO_RS22405 at 5129.361 kb on - strand, within HSERO_RS22405 at 5129.408 kb on + strand, within HSERO_RS22405 at 5129.419 kb on + strand, within HSERO_RS22405 at 5129.431 kb on + strand, within HSERO_RS22405 at 5129.633 kb on + strand, within HSERO_RS22405 at 5129.641 kb on - strand, within HSERO_RS22405 at 5129.737 kb on - strand at 5129.797 kb on + strand at 5129.817 kb on - strand at 5129.837 kb on - strand at 5129.856 kb on + strand at 5129.960 kb on - strand at 5129.965 kb on - strand at 5130.008 kb on - strand at 5130.105 kb on + strand, within HSERO_RS22410 at 5130.118 kb on + strand, within HSERO_RS22410 at 5130.216 kb on + strand, within HSERO_RS22410 at 5130.248 kb on - strand, within HSERO_RS22410 at 5130.284 kb on + strand, within HSERO_RS22410 at 5130.437 kb on + strand, within HSERO_RS22410 at 5130.528 kb on - strand, within HSERO_RS22410 at 5130.557 kb on + strand, within HSERO_RS22410 at 5130.661 kb on - strand, within HSERO_RS22410 at 5130.686 kb on + strand at 5130.694 kb on - strand at 5130.845 kb on + strand at 5130.927 kb on + strand, within HSERO_RS22415 at 5130.940 kb on - strand, within HSERO_RS22415 at 5131.218 kb on - strand at 5131.308 kb on - strand, within HSERO_RS22420 at 5131.392 kb on - strand, within HSERO_RS22420 at 5131.472 kb on - strand, within HSERO_RS22420 at 5131.705 kb on + strand, within HSERO_RS22420 at 5131.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,129,230 + HSERO_RS22405 0.71 -0.5 5,129,347 - HSERO_RS22405 0.76 +0.7 5,129,361 - HSERO_RS22405 0.76 +0.1 5,129,361 - HSERO_RS22405 0.76 +0.9 5,129,361 - HSERO_RS22405 0.76 -0.7 5,129,361 - HSERO_RS22405 0.76 +0.3 5,129,408 + HSERO_RS22405 0.78 +0.0 5,129,419 + HSERO_RS22405 0.79 -3.0 5,129,431 + HSERO_RS22405 0.79 -0.8 5,129,633 + HSERO_RS22405 0.87 -0.7 5,129,641 - HSERO_RS22405 0.88 +0.2 5,129,737 - -0.3 5,129,797 + -1.2 5,129,817 - -0.0 5,129,837 - +0.6 5,129,856 + +0.7 5,129,960 - +0.1 5,129,965 - +0.2 5,130,008 - -0.0 5,130,105 + HSERO_RS22410 0.19 +0.0 5,130,118 + HSERO_RS22410 0.20 +0.9 5,130,216 + HSERO_RS22410 0.33 -0.0 5,130,248 - HSERO_RS22410 0.37 +5.9 5,130,284 + HSERO_RS22410 0.41 -0.6 5,130,437 + HSERO_RS22410 0.61 +1.4 5,130,528 - HSERO_RS22410 0.72 +0.2 5,130,557 + HSERO_RS22410 0.76 +1.0 5,130,661 - HSERO_RS22410 0.89 +1.2 5,130,686 + +0.3 5,130,694 - +0.1 5,130,845 + +0.2 5,130,927 + HSERO_RS22415 0.29 -0.4 5,130,940 - HSERO_RS22415 0.33 -0.2 5,131,218 - +0.4 5,131,308 - HSERO_RS22420 0.24 +0.5 5,131,392 - HSERO_RS22420 0.37 -0.2 5,131,472 - HSERO_RS22420 0.50 +0.7 5,131,705 + HSERO_RS22420 0.87 +2.1 5,131,723 - +1.2
Or see this region's nucleotide sequence