Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22370 and HSERO_RS22375 are separated by 149 nucleotides HSERO_RS22375 and HSERO_RS22380 are separated by 195 nucleotides HSERO_RS22380 and HSERO_RS22385 are separated by 50 nucleotides
HSERO_RS22370: HSERO_RS22370 - lipid kinase, at 5,119,342 to 5,120,418
_RS22370
HSERO_RS22375: HSERO_RS22375 - hypothetical protein, at 5,120,568 to 5,121,488
_RS22375
HSERO_RS22380: HSERO_RS22380 - hypothetical protein, at 5,121,684 to 5,122,391
_RS22380
HSERO_RS22385: HSERO_RS22385 - GMC family oxidoreductase, at 5,122,442 to 5,124,223
_RS22385
Position (kb) 5120
5121
5122 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 5119.832 kb on + strand, within HSERO_RS22370 at 5119.957 kb on + strand, within HSERO_RS22370 at 5120.018 kb on - strand, within HSERO_RS22370 at 5120.235 kb on + strand, within HSERO_RS22370 at 5120.471 kb on + strand at 5120.520 kb on + strand at 5120.528 kb on - strand at 5120.530 kb on + strand at 5120.538 kb on - strand at 5120.582 kb on - strand at 5120.735 kb on - strand, within HSERO_RS22375 at 5121.010 kb on - strand, within HSERO_RS22375 at 5121.022 kb on - strand, within HSERO_RS22375 at 5121.167 kb on - strand, within HSERO_RS22375 at 5121.172 kb on - strand, within HSERO_RS22375 at 5121.230 kb on + strand, within HSERO_RS22375 at 5121.245 kb on - strand, within HSERO_RS22375 at 5121.245 kb on - strand, within HSERO_RS22375 at 5121.433 kb on + strand at 5121.533 kb on + strand at 5121.627 kb on + strand at 5121.632 kb on + strand at 5121.857 kb on + strand, within HSERO_RS22380 at 5121.955 kb on - strand, within HSERO_RS22380 at 5122.128 kb on + strand, within HSERO_RS22380 at 5122.408 kb on + strand at 5122.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,119,832 + HSERO_RS22370 0.45 -0.2 5,119,957 + HSERO_RS22370 0.57 -1.7 5,120,018 - HSERO_RS22370 0.63 +0.6 5,120,235 + HSERO_RS22370 0.83 -1.3 5,120,471 + +1.1 5,120,520 + -0.7 5,120,528 - +0.5 5,120,530 + +0.2 5,120,538 - +0.6 5,120,582 - +0.4 5,120,735 - HSERO_RS22375 0.18 +8.1 5,121,010 - HSERO_RS22375 0.48 -0.1 5,121,022 - HSERO_RS22375 0.49 +2.1 5,121,167 - HSERO_RS22375 0.65 +0.1 5,121,172 - HSERO_RS22375 0.66 +0.6 5,121,230 + HSERO_RS22375 0.72 +0.3 5,121,245 - HSERO_RS22375 0.74 +1.0 5,121,245 - HSERO_RS22375 0.74 -0.2 5,121,433 + +0.2 5,121,533 + +0.4 5,121,627 + +0.5 5,121,632 + -0.4 5,121,857 + HSERO_RS22380 0.24 -0.4 5,121,955 - HSERO_RS22380 0.38 -1.3 5,122,128 + HSERO_RS22380 0.63 +0.4 5,122,408 + +2.1 5,122,440 - -0.1
Or see this region's nucleotide sequence