Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22045

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS22040 and HSERO_RS22045 are separated by 54 nucleotidesHSERO_RS22045 and HSERO_RS22050 are separated by 14 nucleotides HSERO_RS22040: HSERO_RS22040 - CDP-glucose 4,6-dehydratase, at 5,039,081 to 5,040,157 _RS22040 HSERO_RS22045: HSERO_RS22045 - UDP-glucose 4-epimerase, at 5,040,212 to 5,041,222 _RS22045 HSERO_RS22050: HSERO_RS22050 - spore coat protein, at 5,041,237 to 5,042,220 _RS22050 Position (kb) 5040 5041 5042Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5039.975 kb on - strand, within HSERO_RS22040at 5040.003 kb on + strand, within HSERO_RS22040at 5040.011 kb on - strand, within HSERO_RS22040at 5040.046 kb on + strandat 5040.126 kb on - strandat 5040.135 kb on + strandat 5040.194 kb on + strandat 5040.271 kb on + strandat 5040.271 kb on + strandat 5040.279 kb on - strandat 5040.373 kb on + strand, within HSERO_RS22045at 5040.411 kb on - strand, within HSERO_RS22045at 5040.457 kb on + strand, within HSERO_RS22045at 5040.465 kb on - strand, within HSERO_RS22045at 5040.589 kb on + strand, within HSERO_RS22045at 5041.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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5,039,975 - HSERO_RS22040 0.83 -1.6
5,040,003 + HSERO_RS22040 0.86 -0.3
5,040,011 - HSERO_RS22040 0.86 -2.3
5,040,046 + +0.1
5,040,126 - +3.9
5,040,135 + -0.0
5,040,194 + -0.1
5,040,271 + -1.7
5,040,271 + +0.2
5,040,279 - +1.0
5,040,373 + HSERO_RS22045 0.16 +0.8
5,040,411 - HSERO_RS22045 0.20 +1.6
5,040,457 + HSERO_RS22045 0.24 +0.1
5,040,465 - HSERO_RS22045 0.25 +0.2
5,040,589 + HSERO_RS22045 0.37 -0.6
5,041,170 + +0.2

Or see this region's nucleotide sequence