Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21785 and HSERO_RS21790 are separated by 28 nucleotides HSERO_RS21790 and HSERO_RS21795 are separated by 53 nucleotides HSERO_RS21795 and HSERO_RS21800 are separated by 352 nucleotides
HSERO_RS21785: HSERO_RS21785 - arogenate dehydratase, at 4,990,593 to 4,991,396
_RS21785
HSERO_RS21790: HSERO_RS21790 - polyphosphate kinase, at 4,991,425 to 4,992,237
_RS21790
HSERO_RS21795: HSERO_RS21795 - CoA-binding protein, at 4,992,291 to 4,992,752
_RS21795
HSERO_RS21800: HSERO_RS21800 - F0F1 ATP synthase subunit epsilon, at 4,993,105 to 4,993,527
_RS21800
Position (kb) 4991
4992
4993 Strain fitness (log2 ratio) -1
0
1
2
3 at 4990.499 kb on + strand at 4990.567 kb on + strand at 4990.712 kb on + strand, within HSERO_RS21785 at 4990.815 kb on + strand, within HSERO_RS21785 at 4990.885 kb on - strand, within HSERO_RS21785 at 4990.935 kb on - strand, within HSERO_RS21785 at 4990.940 kb on - strand, within HSERO_RS21785 at 4991.024 kb on - strand, within HSERO_RS21785 at 4991.105 kb on - strand, within HSERO_RS21785 at 4991.211 kb on - strand, within HSERO_RS21785 at 4991.232 kb on + strand, within HSERO_RS21785 at 4991.325 kb on + strand at 4991.392 kb on + strand at 4991.494 kb on + strand at 4991.502 kb on - strand at 4991.891 kb on + strand, within HSERO_RS21790 at 4991.920 kb on - strand, within HSERO_RS21790 at 4992.074 kb on + strand, within HSERO_RS21790 at 4992.082 kb on - strand, within HSERO_RS21790 at 4992.309 kb on - strand at 4992.526 kb on + strand, within HSERO_RS21795 at 4992.526 kb on + strand, within HSERO_RS21795 at 4992.742 kb on + strand at 4992.750 kb on - strand at 4992.797 kb on - strand at 4992.836 kb on - strand at 4992.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,990,499 + +1.0 4,990,567 + -0.2 4,990,712 + HSERO_RS21785 0.15 +0.3 4,990,815 + HSERO_RS21785 0.28 -0.0 4,990,885 - HSERO_RS21785 0.36 -0.0 4,990,935 - HSERO_RS21785 0.43 -1.5 4,990,940 - HSERO_RS21785 0.43 +0.4 4,991,024 - HSERO_RS21785 0.54 +2.9 4,991,105 - HSERO_RS21785 0.64 +0.6 4,991,211 - HSERO_RS21785 0.77 -0.1 4,991,232 + HSERO_RS21785 0.79 -0.1 4,991,325 + -0.0 4,991,392 + -0.7 4,991,494 + -0.2 4,991,502 - +0.6 4,991,891 + HSERO_RS21790 0.57 -0.1 4,991,920 - HSERO_RS21790 0.61 +0.2 4,992,074 + HSERO_RS21790 0.80 +0.0 4,992,082 - HSERO_RS21790 0.81 +2.6 4,992,309 - -0.2 4,992,526 + HSERO_RS21795 0.51 +1.3 4,992,526 + HSERO_RS21795 0.51 +0.4 4,992,742 + -0.2 4,992,750 - -0.7 4,992,797 - +0.5 4,992,836 - -0.2 4,992,888 + +1.0
Or see this region's nucleotide sequence