Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21205 and HSERO_RS21210 overlap by 8 nucleotides HSERO_RS21210 and HSERO_RS21215 are separated by 24 nucleotides HSERO_RS21215 and HSERO_RS21220 are separated by 68 nucleotides
HSERO_RS21205: HSERO_RS21205 - hypothetical protein, at 4,851,333 to 4,852,370
_RS21205
HSERO_RS21210: HSERO_RS21210 - membrane protein, at 4,852,363 to 4,853,838
_RS21210
HSERO_RS21215: HSERO_RS21215 - hypothetical protein, at 4,853,863 to 4,854,468
_RS21215
HSERO_RS21220: HSERO_RS21220 - hypothetical protein, at 4,854,537 to 4,858,586
_RS21220
Position (kb) 4852
4853
4854 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4851.784 kb on + strand, within HSERO_RS21205 at 4851.791 kb on - strand, within HSERO_RS21205 at 4851.792 kb on - strand, within HSERO_RS21205 at 4851.894 kb on - strand, within HSERO_RS21205 at 4851.978 kb on - strand, within HSERO_RS21205 at 4851.992 kb on - strand, within HSERO_RS21205 at 4852.048 kb on - strand, within HSERO_RS21205 at 4852.056 kb on + strand, within HSERO_RS21205 at 4852.104 kb on - strand, within HSERO_RS21205 at 4852.109 kb on - strand, within HSERO_RS21205 at 4852.306 kb on + strand at 4852.341 kb on + strand at 4852.378 kb on - strand at 4852.568 kb on + strand, within HSERO_RS21210 at 4852.607 kb on - strand, within HSERO_RS21210 at 4852.863 kb on + strand, within HSERO_RS21210 at 4852.982 kb on - strand, within HSERO_RS21210 at 4852.989 kb on + strand, within HSERO_RS21210 at 4852.997 kb on - strand, within HSERO_RS21210 at 4853.002 kb on - strand, within HSERO_RS21210 at 4853.058 kb on + strand, within HSERO_RS21210 at 4853.089 kb on + strand, within HSERO_RS21210 at 4853.120 kb on - strand, within HSERO_RS21210 at 4853.135 kb on - strand, within HSERO_RS21210 at 4853.156 kb on + strand, within HSERO_RS21210 at 4853.397 kb on + strand, within HSERO_RS21210 at 4853.405 kb on - strand, within HSERO_RS21210 at 4853.630 kb on - strand, within HSERO_RS21210 at 4853.663 kb on - strand, within HSERO_RS21210 at 4853.677 kb on + strand, within HSERO_RS21210 at 4853.684 kb on + strand, within HSERO_RS21210 at 4853.883 kb on - strand at 4853.926 kb on - strand, within HSERO_RS21215 at 4853.936 kb on - strand, within HSERO_RS21215 at 4854.056 kb on - strand, within HSERO_RS21215 at 4854.073 kb on - strand, within HSERO_RS21215 at 4854.140 kb on - strand, within HSERO_RS21215 at 4854.248 kb on + strand, within HSERO_RS21215 at 4854.252 kb on + strand, within HSERO_RS21215 at 4854.489 kb on - strand at 4854.512 kb on + strand at 4854.555 kb on - strand at 4854.686 kb on + strand at 4854.723 kb on - strand at 4854.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,851,784 + HSERO_RS21205 0.43 +0.9 4,851,791 - HSERO_RS21205 0.44 +1.5 4,851,792 - HSERO_RS21205 0.44 +0.0 4,851,894 - HSERO_RS21205 0.54 +1.2 4,851,978 - HSERO_RS21205 0.62 -1.1 4,851,992 - HSERO_RS21205 0.63 +1.2 4,852,048 - HSERO_RS21205 0.69 +0.3 4,852,056 + HSERO_RS21205 0.70 +0.5 4,852,104 - HSERO_RS21205 0.74 +0.6 4,852,109 - HSERO_RS21205 0.75 +0.8 4,852,306 + +0.8 4,852,341 + +2.6 4,852,378 - +0.3 4,852,568 + HSERO_RS21210 0.14 -1.1 4,852,607 - HSERO_RS21210 0.17 +0.4 4,852,863 + HSERO_RS21210 0.34 +0.4 4,852,982 - HSERO_RS21210 0.42 +0.7 4,852,989 + HSERO_RS21210 0.42 +0.2 4,852,997 - HSERO_RS21210 0.43 -0.2 4,853,002 - HSERO_RS21210 0.43 +0.4 4,853,058 + HSERO_RS21210 0.47 +0.8 4,853,089 + HSERO_RS21210 0.49 +0.4 4,853,120 - HSERO_RS21210 0.51 -0.4 4,853,135 - HSERO_RS21210 0.52 +0.5 4,853,156 + HSERO_RS21210 0.54 +0.8 4,853,397 + HSERO_RS21210 0.70 +0.9 4,853,405 - HSERO_RS21210 0.71 +0.9 4,853,630 - HSERO_RS21210 0.86 +0.3 4,853,663 - HSERO_RS21210 0.88 +4.5 4,853,677 + HSERO_RS21210 0.89 +0.9 4,853,684 + HSERO_RS21210 0.89 +0.4 4,853,883 - +0.1 4,853,926 - HSERO_RS21215 0.10 -0.1 4,853,936 - HSERO_RS21215 0.12 +0.8 4,854,056 - HSERO_RS21215 0.32 +0.2 4,854,073 - HSERO_RS21215 0.35 +0.5 4,854,140 - HSERO_RS21215 0.46 +1.6 4,854,248 + HSERO_RS21215 0.64 +3.0 4,854,252 + HSERO_RS21215 0.64 +1.2 4,854,489 - +0.4 4,854,512 + +1.6 4,854,555 - +0.4 4,854,686 + +0.3 4,854,723 - +1.4 4,854,765 + -0.6
Or see this region's nucleotide sequence