Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20955

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20945 and HSERO_RS20950 are separated by 223 nucleotidesHSERO_RS20950 and HSERO_RS20955 are separated by 73 nucleotidesHSERO_RS20955 and HSERO_RS20960 are separated by 191 nucleotides HSERO_RS20945: HSERO_RS20945 - RNA-binding protein, at 4,792,048 to 4,794,399 _RS20945 HSERO_RS20950: HSERO_RS20950 - peptidyl-tRNA hydrolase, at 4,794,623 to 4,795,201 _RS20950 HSERO_RS20955: HSERO_RS20955 - thiol:disulfide interchange protein, at 4,795,275 to 4,796,042 _RS20955 HSERO_RS20960: HSERO_RS20960 - oxygenase, at 4,796,234 to 4,797,466 _RS20960 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4794.371 kb on - strandat 4794.386 kb on + strandat 4794.434 kb on + strandat 4794.623 kb on + strandat 4795.226 kb on + strandat 4795.230 kb on + strandat 4795.372 kb on + strandat 4795.552 kb on + strand, within HSERO_RS20955at 4795.581 kb on - strand, within HSERO_RS20955at 4795.585 kb on + strand, within HSERO_RS20955at 4795.801 kb on - strand, within HSERO_RS20955at 4795.843 kb on - strand, within HSERO_RS20955at 4796.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,794,371 - -0.1
4,794,386 + +1.0
4,794,434 + -0.6
4,794,623 + +0.5
4,795,226 + -0.0
4,795,230 + -0.4
4,795,372 + +0.9
4,795,552 + HSERO_RS20955 0.36 -0.6
4,795,581 - HSERO_RS20955 0.40 +5.4
4,795,585 + HSERO_RS20955 0.40 -0.0
4,795,801 - HSERO_RS20955 0.68 +0.8
4,795,843 - HSERO_RS20955 0.74 -0.6
4,796,069 + -0.3

Or see this region's nucleotide sequence