Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19915 and HSERO_RS19920 are separated by 269 nucleotides HSERO_RS19920 and HSERO_RS19925 are separated by 19 nucleotides HSERO_RS19925 and HSERO_RS19930 are separated by 100 nucleotides
HSERO_RS19915: HSERO_RS19915 - IclR family transcriptional regulator, at 4,571,071 to 4,571,871
_RS19915
HSERO_RS19920: HSERO_RS19920 - protocatechuate 3,4-dioxygenase subunit beta, at 4,572,141 to 4,572,833
_RS19920
HSERO_RS19925: HSERO_RS19925 - protocatechuate 3,4-dioxygenase, at 4,572,853 to 4,573,365
_RS19925
HSERO_RS19930: HSERO_RS19930 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,573,466 to 4,574,833
_RS19930
Position (kb) 4572
4573 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4571.235 kb on + strand, within HSERO_RS19915 at 4571.358 kb on - strand, within HSERO_RS19915 at 4571.486 kb on - strand, within HSERO_RS19915 at 4571.525 kb on + strand, within HSERO_RS19915 at 4571.525 kb on + strand, within HSERO_RS19915 at 4571.619 kb on - strand, within HSERO_RS19915 at 4571.707 kb on + strand, within HSERO_RS19915 at 4571.707 kb on + strand, within HSERO_RS19915 at 4572.006 kb on + strand at 4572.054 kb on - strand at 4572.172 kb on + strand at 4572.190 kb on - strand at 4572.312 kb on - strand, within HSERO_RS19920 at 4572.422 kb on + strand, within HSERO_RS19920 at 4572.614 kb on + strand, within HSERO_RS19920 at 4572.653 kb on - strand, within HSERO_RS19920 at 4572.680 kb on - strand, within HSERO_RS19920 at 4572.861 kb on + strand at 4572.869 kb on - strand at 4572.901 kb on + strand at 4573.191 kb on - strand, within HSERO_RS19925 at 4573.643 kb on - strand, within HSERO_RS19930 at 4573.733 kb on + strand, within HSERO_RS19930 at 4573.808 kb on + strand, within HSERO_RS19930
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,571,235 + HSERO_RS19915 0.20 +1.5 4,571,358 - HSERO_RS19915 0.36 +0.7 4,571,486 - HSERO_RS19915 0.52 -1.4 4,571,525 + HSERO_RS19915 0.57 +0.3 4,571,525 + HSERO_RS19915 0.57 +0.8 4,571,619 - HSERO_RS19915 0.68 +0.4 4,571,707 + HSERO_RS19915 0.79 +0.9 4,571,707 + HSERO_RS19915 0.79 -0.0 4,572,006 + +1.0 4,572,054 - +1.0 4,572,172 + -2.2 4,572,190 - +0.3 4,572,312 - HSERO_RS19920 0.25 +4.6 4,572,422 + HSERO_RS19920 0.41 -0.2 4,572,614 + HSERO_RS19920 0.68 -0.0 4,572,653 - HSERO_RS19920 0.74 +0.0 4,572,680 - HSERO_RS19920 0.78 +0.5 4,572,861 + +0.6 4,572,869 - -0.4 4,572,901 + +5.1 4,573,191 - HSERO_RS19925 0.66 +0.6 4,573,643 - HSERO_RS19930 0.13 +1.2 4,573,733 + HSERO_RS19930 0.20 +0.8 4,573,808 + HSERO_RS19930 0.25 -0.5
Or see this region's nucleotide sequence