Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19775 and HSERO_RS19780 are separated by 120 nucleotides HSERO_RS19780 and HSERO_RS19785 are separated by 10 nucleotides
HSERO_RS19775: HSERO_RS19775 - acriflavine resistance protein B, at 4,535,647 to 4,538,748
_RS19775
HSERO_RS19780: HSERO_RS19780 - chemotaxis protein CheY, at 4,538,869 to 4,539,666
_RS19780
HSERO_RS19785: HSERO_RS19785 - sensor histidine kinase, at 4,539,677 to 4,540,762
_RS19785
Position (kb) 4538
4539
4540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4537.949 kb on - strand, within HSERO_RS19775 at 4538.420 kb on - strand, within HSERO_RS19775 at 4538.576 kb on + strand at 4538.609 kb on - strand at 4538.713 kb on + strand at 4538.813 kb on + strand at 4538.831 kb on + strand at 4539.051 kb on - strand, within HSERO_RS19780 at 4539.141 kb on + strand, within HSERO_RS19780 at 4539.251 kb on + strand, within HSERO_RS19780 at 4539.282 kb on - strand, within HSERO_RS19780 at 4539.311 kb on - strand, within HSERO_RS19780 at 4539.311 kb on - strand, within HSERO_RS19780 at 4539.313 kb on + strand, within HSERO_RS19780 at 4539.396 kb on + strand, within HSERO_RS19780 at 4539.417 kb on - strand, within HSERO_RS19780 at 4539.436 kb on - strand, within HSERO_RS19780 at 4539.439 kb on + strand at 4539.598 kb on + strand at 4539.619 kb on + strand at 4539.837 kb on - strand, within HSERO_RS19785 at 4539.902 kb on + strand, within HSERO_RS19785 at 4540.087 kb on + strand, within HSERO_RS19785 at 4540.142 kb on - strand, within HSERO_RS19785 at 4540.331 kb on - strand, within HSERO_RS19785 at 4540.362 kb on - strand, within HSERO_RS19785 at 4540.400 kb on + strand, within HSERO_RS19785 at 4540.465 kb on - strand, within HSERO_RS19785 at 4540.556 kb on - strand, within HSERO_RS19785
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,537,949 - HSERO_RS19775 0.74 +0.9 4,538,420 - HSERO_RS19775 0.89 +1.1 4,538,576 + +0.1 4,538,609 - -0.1 4,538,713 + -0.4 4,538,813 + +0.4 4,538,831 + +1.0 4,539,051 - HSERO_RS19780 0.23 +0.6 4,539,141 + HSERO_RS19780 0.34 -0.3 4,539,251 + HSERO_RS19780 0.48 -0.3 4,539,282 - HSERO_RS19780 0.52 -1.1 4,539,311 - HSERO_RS19780 0.55 +2.0 4,539,311 - HSERO_RS19780 0.55 +0.4 4,539,313 + HSERO_RS19780 0.56 +1.0 4,539,396 + HSERO_RS19780 0.66 +0.8 4,539,417 - HSERO_RS19780 0.69 +1.7 4,539,436 - HSERO_RS19780 0.71 +0.6 4,539,439 + -0.4 4,539,598 + -0.1 4,539,619 + -0.1 4,539,837 - HSERO_RS19785 0.15 +0.1 4,539,902 + HSERO_RS19785 0.21 -0.3 4,540,087 + HSERO_RS19785 0.38 -0.8 4,540,142 - HSERO_RS19785 0.43 -2.3 4,540,331 - HSERO_RS19785 0.60 +2.4 4,540,362 - HSERO_RS19785 0.63 -1.2 4,540,400 + HSERO_RS19785 0.67 -0.0 4,540,465 - HSERO_RS19785 0.73 -0.7 4,540,556 - HSERO_RS19785 0.81 -0.8
Or see this region's nucleotide sequence