Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19740 and HSERO_RS19745 are separated by 61 nucleotides HSERO_RS19745 and HSERO_RS19750 are separated by 193 nucleotides HSERO_RS19750 and HSERO_RS19755 overlap by 2 nucleotides
HSERO_RS19740: HSERO_RS19740 - transcriptional regulator, at 4,528,566 to 4,529,300
_RS19740
HSERO_RS19745: HSERO_RS19745 - AraC family transcriptional regulator, at 4,529,362 to 4,530,348
_RS19745
HSERO_RS19750: HSERO_RS19750 - hypothetical protein, at 4,530,542 to 4,530,853
_RS19750
HSERO_RS19755: HSERO_RS19755 - betaine-aldehyde dehydrogenase, at 4,530,852 to 4,532,306
_RS19755
Position (kb) 4529
4530
4531 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 4528.542 kb on - strand at 4528.556 kb on + strand at 4528.564 kb on - strand at 4528.564 kb on - strand at 4528.564 kb on - strand at 4528.656 kb on + strand, within HSERO_RS19740 at 4528.752 kb on - strand, within HSERO_RS19740 at 4528.793 kb on + strand, within HSERO_RS19740 at 4528.917 kb on + strand, within HSERO_RS19740 at 4529.108 kb on - strand, within HSERO_RS19740 at 4529.186 kb on + strand, within HSERO_RS19740 at 4529.189 kb on - strand, within HSERO_RS19740 at 4529.191 kb on + strand, within HSERO_RS19740 at 4529.255 kb on + strand at 4529.338 kb on + strand at 4529.357 kb on + strand at 4529.487 kb on - strand, within HSERO_RS19745 at 4529.601 kb on - strand, within HSERO_RS19745 at 4529.616 kb on + strand, within HSERO_RS19745 at 4529.642 kb on - strand, within HSERO_RS19745 at 4529.772 kb on + strand, within HSERO_RS19745 at 4529.772 kb on + strand, within HSERO_RS19745 at 4529.818 kb on + strand, within HSERO_RS19745 at 4530.028 kb on + strand, within HSERO_RS19745 at 4530.245 kb on + strand, within HSERO_RS19745 at 4530.253 kb on - strand at 4530.394 kb on - strand at 4530.494 kb on + strand at 4530.642 kb on - strand, within HSERO_RS19750 at 4530.784 kb on - strand, within HSERO_RS19750 at 4530.784 kb on - strand, within HSERO_RS19750 at 4531.045 kb on - strand, within HSERO_RS19755 at 4531.176 kb on + strand, within HSERO_RS19755 at 4531.263 kb on + strand, within HSERO_RS19755 at 4531.268 kb on + strand, within HSERO_RS19755 at 4531.271 kb on - strand, within HSERO_RS19755 at 4531.321 kb on - strand, within HSERO_RS19755
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 4,528,542 - +0.0 4,528,556 + +2.5 4,528,564 - -1.2 4,528,564 - -0.9 4,528,564 - +1.3 4,528,656 + HSERO_RS19740 0.12 -0.4 4,528,752 - HSERO_RS19740 0.25 +0.5 4,528,793 + HSERO_RS19740 0.31 -0.7 4,528,917 + HSERO_RS19740 0.48 -0.2 4,529,108 - HSERO_RS19740 0.74 -0.3 4,529,186 + HSERO_RS19740 0.84 -0.1 4,529,189 - HSERO_RS19740 0.85 +0.0 4,529,191 + HSERO_RS19740 0.85 -0.4 4,529,255 + -1.3 4,529,338 + +0.0 4,529,357 + -0.2 4,529,487 - HSERO_RS19745 0.13 +0.6 4,529,601 - HSERO_RS19745 0.24 +0.6 4,529,616 + HSERO_RS19745 0.26 +0.8 4,529,642 - HSERO_RS19745 0.28 +0.7 4,529,772 + HSERO_RS19745 0.42 +0.2 4,529,772 + HSERO_RS19745 0.42 +1.0 4,529,818 + HSERO_RS19745 0.46 +5.6 4,530,028 + HSERO_RS19745 0.67 -0.3 4,530,245 + HSERO_RS19745 0.89 -0.7 4,530,253 - -0.2 4,530,394 - -0.0 4,530,494 + +0.4 4,530,642 - HSERO_RS19750 0.32 +0.2 4,530,784 - HSERO_RS19750 0.78 +0.2 4,530,784 - HSERO_RS19750 0.78 -0.6 4,531,045 - HSERO_RS19755 0.13 +0.3 4,531,176 + HSERO_RS19755 0.22 +0.4 4,531,263 + HSERO_RS19755 0.28 +0.4 4,531,268 + HSERO_RS19755 0.29 +0.2 4,531,271 - HSERO_RS19755 0.29 -0.1 4,531,321 - HSERO_RS19755 0.32 +1.9
Or see this region's nucleotide sequence