Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08400

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08395 and HSERO_RS08400 are separated by 58 nucleotidesHSERO_RS08400 and HSERO_RS08405 are separated by 125 nucleotides HSERO_RS08395: HSERO_RS08395 - 2-aminoadipate aminotransferase, at 1,912,130 to 1,913,572 _RS08395 HSERO_RS08400: HSERO_RS08400 - glutathione S-transferase, at 1,913,631 to 1,914,302 _RS08400 HSERO_RS08405: HSERO_RS08405 - membrane protein, at 1,914,428 to 1,915,756 _RS08405 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -1 0 1 2 3 4at 1912.672 kb on - strand, within HSERO_RS08395at 1912.694 kb on + strand, within HSERO_RS08395at 1912.719 kb on + strand, within HSERO_RS08395at 1913.290 kb on + strand, within HSERO_RS08395at 1913.349 kb on + strand, within HSERO_RS08395at 1913.591 kb on + strandat 1913.752 kb on + strand, within HSERO_RS08400at 1913.770 kb on - strand, within HSERO_RS08400at 1913.833 kb on - strand, within HSERO_RS08400at 1913.847 kb on - strand, within HSERO_RS08400at 1913.987 kb on + strand, within HSERO_RS08400at 1914.121 kb on - strand, within HSERO_RS08400at 1914.158 kb on - strand, within HSERO_RS08400at 1914.205 kb on - strand, within HSERO_RS08400at 1914.288 kb on + strandat 1914.841 kb on + strand, within HSERO_RS08405at 1915.116 kb on + strand, within HSERO_RS08405

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,912,672 - HSERO_RS08395 0.38 +0.4
1,912,694 + HSERO_RS08395 0.39 +0.2
1,912,719 + HSERO_RS08395 0.41 +0.2
1,913,290 + HSERO_RS08395 0.80 -0.2
1,913,349 + HSERO_RS08395 0.84 -0.7
1,913,591 + +2.7
1,913,752 + HSERO_RS08400 0.18 +0.4
1,913,770 - HSERO_RS08400 0.21 +0.3
1,913,833 - HSERO_RS08400 0.30 +4.7
1,913,847 - HSERO_RS08400 0.32 -0.2
1,913,987 + HSERO_RS08400 0.53 +1.6
1,914,121 - HSERO_RS08400 0.73 +0.9
1,914,158 - HSERO_RS08400 0.78 +0.4
1,914,205 - HSERO_RS08400 0.85 -0.1
1,914,288 + -0.4
1,914,841 + HSERO_RS08405 0.31 +2.5
1,915,116 + HSERO_RS08405 0.52 +2.5

Or see this region's nucleotide sequence