Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS07060 and HSERO_RS07065 are separated by 188 nucleotides HSERO_RS07065 and HSERO_RS07070 are separated by 36 nucleotides HSERO_RS07070 and HSERO_RS07075 overlap by 4 nucleotides HSERO_RS07075 and HSERO_RS07080 overlap by 4 nucleotides
HSERO_RS07060: HSERO_RS07060 - riboflavin kinase, at 1,609,404 to 1,610,381
_RS07060
HSERO_RS07065: HSERO_RS07065 - GntR family transcriptional regulator, at 1,610,570 to 1,611,274
_RS07065
HSERO_RS07070: HSERO_RS07070 - hypothetical protein, at 1,611,311 to 1,611,688
_RS07070
HSERO_RS07075: HSERO_RS07075 - cysteine hydrolase, at 1,611,685 to 1,612,368
_RS07075
HSERO_RS07080: HSERO_RS07080 - ABC transporter ATP-binding protein, at 1,612,365 to 1,613,933
_RS07080
Position (kb) 1611
1612 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1610.568 kb on + strand at 1610.573 kb on + strand at 1610.727 kb on + strand, within HSERO_RS07065 at 1610.825 kb on - strand, within HSERO_RS07065 at 1610.901 kb on + strand, within HSERO_RS07065 at 1611.008 kb on - strand, within HSERO_RS07065 at 1611.022 kb on + strand, within HSERO_RS07065 at 1611.031 kb on - strand, within HSERO_RS07065 at 1611.072 kb on - strand, within HSERO_RS07065 at 1611.119 kb on - strand, within HSERO_RS07065 at 1611.128 kb on + strand, within HSERO_RS07065 at 1611.206 kb on + strand at 1611.239 kb on - strand at 1611.372 kb on - strand, within HSERO_RS07070 at 1611.442 kb on + strand, within HSERO_RS07070 at 1611.533 kb on + strand, within HSERO_RS07070 at 1611.538 kb on - strand, within HSERO_RS07070 at 1611.552 kb on + strand, within HSERO_RS07070 at 1611.693 kb on - strand at 1611.861 kb on - strand, within HSERO_RS07075 at 1611.885 kb on - strand, within HSERO_RS07075 at 1612.149 kb on - strand, within HSERO_RS07075 at 1612.249 kb on + strand, within HSERO_RS07075 at 1612.252 kb on - strand, within HSERO_RS07075 at 1612.319 kb on - strand at 1612.340 kb on + strand at 1612.348 kb on - strand at 1612.413 kb on - strand at 1612.460 kb on - strand at 1612.603 kb on + strand, within HSERO_RS07080
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,610,568 + +0.5 1,610,573 + +0.5 1,610,727 + HSERO_RS07065 0.22 -0.1 1,610,825 - HSERO_RS07065 0.36 +0.1 1,610,901 + HSERO_RS07065 0.47 -0.3 1,611,008 - HSERO_RS07065 0.62 +0.5 1,611,022 + HSERO_RS07065 0.64 +0.8 1,611,031 - HSERO_RS07065 0.65 +0.0 1,611,072 - HSERO_RS07065 0.71 -0.5 1,611,119 - HSERO_RS07065 0.78 +1.2 1,611,128 + HSERO_RS07065 0.79 +0.4 1,611,206 + -0.4 1,611,239 - -1.4 1,611,372 - HSERO_RS07070 0.16 -0.6 1,611,442 + HSERO_RS07070 0.35 +4.1 1,611,533 + HSERO_RS07070 0.59 -0.4 1,611,538 - HSERO_RS07070 0.60 +0.1 1,611,552 + HSERO_RS07070 0.64 +0.2 1,611,693 - +0.3 1,611,861 - HSERO_RS07075 0.26 -0.2 1,611,885 - HSERO_RS07075 0.29 -0.4 1,612,149 - HSERO_RS07075 0.68 +0.9 1,612,249 + HSERO_RS07075 0.82 +0.9 1,612,252 - HSERO_RS07075 0.83 +0.9 1,612,319 - +2.1 1,612,340 + -0.6 1,612,348 - +1.0 1,612,413 - +0.5 1,612,460 - +0.1 1,612,603 + HSERO_RS07080 0.15 -0.4
Or see this region's nucleotide sequence