Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04440 and HSERO_RS04445 are separated by 0 nucleotides HSERO_RS04445 and HSERO_RS04450 are separated by 8 nucleotides HSERO_RS04450 and HSERO_RS04455 are separated by 59 nucleotides HSERO_RS04455 and HSERO_RS04460 are separated by 54 nucleotides
HSERO_RS04440: HSERO_RS04440 - tail protein, at 978,604 to 981,228
_RS04440
HSERO_RS04445: HSERO_RS04445 - hypothetical protein, at 981,229 to 981,342
_RS04445
HSERO_RS04450: HSERO_RS04450 - hypothetical protein, at 981,351 to 981,674
_RS04450
HSERO_RS04455: HSERO_RS04455 - major tail tube protein, at 981,734 to 982,243
_RS04455
HSERO_RS04460: HSERO_RS04460 - tail sheath protein, at 982,298 to 983,473
_RS04460
Position (kb) 981
982 Strain fitness (log2 ratio) -1
0
1
2 at 980.534 kb on - strand, within HSERO_RS04440 at 980.539 kb on - strand, within HSERO_RS04440 at 980.545 kb on + strand, within HSERO_RS04440 at 980.550 kb on + strand, within HSERO_RS04440 at 980.994 kb on + strand at 981.032 kb on - strand at 981.032 kb on - strand at 981.169 kb on - strand at 981.231 kb on + strand at 981.271 kb on - strand at 981.322 kb on - strand, within HSERO_RS04445 at 981.324 kb on - strand, within HSERO_RS04445 at 981.450 kb on - strand, within HSERO_RS04450 at 981.841 kb on + strand, within HSERO_RS04455 at 981.891 kb on + strand, within HSERO_RS04455 at 981.899 kb on - strand, within HSERO_RS04455 at 981.997 kb on + strand, within HSERO_RS04455 at 982.170 kb on - strand, within HSERO_RS04455 at 982.217 kb on - strand at 982.218 kb on - strand at 982.251 kb on - strand at 982.303 kb on - strand at 982.331 kb on + strand at 982.553 kb on - strand, within HSERO_RS04460 at 982.640 kb on + strand, within HSERO_RS04460 at 982.665 kb on + strand, within HSERO_RS04460
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 980,534 - HSERO_RS04440 0.74 -1.0 980,539 - HSERO_RS04440 0.74 +2.5 980,545 + HSERO_RS04440 0.74 -1.2 980,550 + HSERO_RS04440 0.74 -0.7 980,994 + -0.9 981,032 - -1.3 981,032 - +0.7 981,169 - +0.1 981,231 + -0.2 981,271 - -0.1 981,322 - HSERO_RS04445 0.82 -0.6 981,324 - HSERO_RS04445 0.83 -0.2 981,450 - HSERO_RS04450 0.31 +0.7 981,841 + HSERO_RS04455 0.21 -0.3 981,891 + HSERO_RS04455 0.31 -0.1 981,899 - HSERO_RS04455 0.32 -0.3 981,997 + HSERO_RS04455 0.52 +0.6 982,170 - HSERO_RS04455 0.85 -0.3 982,217 - -0.0 982,218 - -0.5 982,251 - -1.2 982,303 - -0.3 982,331 + -0.9 982,553 - HSERO_RS04460 0.22 +2.3 982,640 + HSERO_RS04460 0.29 -0.1 982,665 + HSERO_RS04460 0.31 -0.9
Or see this region's nucleotide sequence