Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04135

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04130 and HSERO_RS04135 are separated by 49 nucleotidesHSERO_RS04135 and HSERO_RS04140 are separated by 95 nucleotides HSERO_RS04130: HSERO_RS04130 - proline/betaine transporter, at 904,585 to 905,871 _RS04130 HSERO_RS04135: HSERO_RS04135 - amidohydrolase, at 905,921 to 907,129 _RS04135 HSERO_RS04140: HSERO_RS04140 - glutaminase, at 907,225 to 908,142 _RS04140 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -1 0 1 2at 905.202 kb on - strand, within HSERO_RS04130at 905.369 kb on + strand, within HSERO_RS04130at 905.377 kb on - strand, within HSERO_RS04130at 905.505 kb on - strand, within HSERO_RS04130at 905.622 kb on + strand, within HSERO_RS04130at 905.850 kb on + strandat 905.867 kb on + strandat 906.177 kb on - strand, within HSERO_RS04135at 906.519 kb on + strand, within HSERO_RS04135at 906.551 kb on - strand, within HSERO_RS04135at 907.285 kb on + strandat 907.488 kb on + strand, within HSERO_RS04140at 907.488 kb on + strand, within HSERO_RS04140at 907.501 kb on - strand, within HSERO_RS04140at 907.553 kb on - strand, within HSERO_RS04140at 907.617 kb on - strand, within HSERO_RS04140at 907.734 kb on + strand, within HSERO_RS04140at 907.822 kb on + strand, within HSERO_RS04140at 907.842 kb on + strand, within HSERO_RS04140at 907.939 kb on - strand, within HSERO_RS04140at 908.057 kb on + strandat 908.057 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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905,202 - HSERO_RS04130 0.48 +1.0
905,369 + HSERO_RS04130 0.61 +0.5
905,377 - HSERO_RS04130 0.62 +0.1
905,505 - HSERO_RS04130 0.71 +0.8
905,622 + HSERO_RS04130 0.81 -0.2
905,850 + -0.4
905,867 + -0.2
906,177 - HSERO_RS04135 0.21 -1.0
906,519 + HSERO_RS04135 0.49 +1.2
906,551 - HSERO_RS04135 0.52 +1.8
907,285 + -0.1
907,488 + HSERO_RS04140 0.29 -0.4
907,488 + HSERO_RS04140 0.29 +0.1
907,501 - HSERO_RS04140 0.30 +0.4
907,553 - HSERO_RS04140 0.36 +0.4
907,617 - HSERO_RS04140 0.43 -1.6
907,734 + HSERO_RS04140 0.55 +0.2
907,822 + HSERO_RS04140 0.65 +0.2
907,842 + HSERO_RS04140 0.67 +1.4
907,939 - HSERO_RS04140 0.78 -0.0
908,057 + +0.3
908,057 + +0.4

Or see this region's nucleotide sequence