Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04055 and HSERO_RS04060 overlap by 11 nucleotides HSERO_RS04060 and HSERO_RS04065 are separated by 74 nucleotides HSERO_RS04065 and HSERO_RS04070 are separated by 90 nucleotides
HSERO_RS04055: HSERO_RS04055 - secretion system protein E, at 887,457 to 889,082
_RS04055
HSERO_RS04060: HSERO_RS04060 - type II secretion system protein F, at 889,072 to 890,145
_RS04060
HSERO_RS04065: HSERO_RS04065 - pilus biosynthesis protein PilS, at 890,220 to 890,771
_RS04065
HSERO_RS04070: HSERO_RS04070 - hypothetical protein, at 890,862 to 891,359
_RS04070
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.539 kb on + strand, within HSERO_RS04055 at 888.547 kb on - strand, within HSERO_RS04055 at 888.633 kb on - strand, within HSERO_RS04055 at 888.642 kb on + strand, within HSERO_RS04055 at 888.652 kb on + strand, within HSERO_RS04055 at 889.072 kb on + strand at 889.072 kb on + strand at 889.081 kb on + strand at 889.089 kb on - strand at 889.586 kb on + strand, within HSERO_RS04060 at 889.603 kb on + strand, within HSERO_RS04060 at 889.836 kb on + strand at 889.867 kb on + strand, within HSERO_RS04060 at 890.125 kb on + strand at 890.251 kb on + strand at 890.272 kb on + strand at 890.378 kb on + strand, within HSERO_RS04065 at 890.431 kb on - strand, within HSERO_RS04065 at 890.456 kb on + strand, within HSERO_RS04065 at 890.610 kb on - strand, within HSERO_RS04065 at 890.612 kb on + strand, within HSERO_RS04065 at 890.761 kb on - strand at 890.848 kb on + strand at 890.853 kb on - strand at 891.029 kb on + strand, within HSERO_RS04070 at 891.067 kb on + strand, within HSERO_RS04070 at 891.075 kb on - strand, within HSERO_RS04070 at 891.124 kb on - strand, within HSERO_RS04070
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 888,539 + HSERO_RS04055 0.67 +0.7 888,547 - HSERO_RS04055 0.67 +1.3 888,633 - HSERO_RS04055 0.72 +0.4 888,642 + HSERO_RS04055 0.73 +2.5 888,652 + HSERO_RS04055 0.73 +0.2 889,072 + -0.5 889,072 + +0.4 889,081 + -0.7 889,089 - -1.1 889,586 + HSERO_RS04060 0.48 -0.1 889,603 + HSERO_RS04060 0.49 +0.3 889,836 + -0.0 889,867 + HSERO_RS04060 0.74 +1.7 890,125 + -0.1 890,251 + -2.4 890,272 + -1.0 890,378 + HSERO_RS04065 0.29 -0.3 890,431 - HSERO_RS04065 0.38 +0.9 890,456 + HSERO_RS04065 0.43 +0.1 890,610 - HSERO_RS04065 0.71 -1.3 890,612 + HSERO_RS04065 0.71 -1.7 890,761 - +0.5 890,848 + -0.7 890,853 - -0.1 891,029 + HSERO_RS04070 0.34 -0.2 891,067 + HSERO_RS04070 0.41 -0.0 891,075 - HSERO_RS04070 0.43 +0.3 891,124 - HSERO_RS04070 0.53 +1.4
Or see this region's nucleotide sequence