Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03995 and HSERO_RS04000 are separated by 93 nucleotides HSERO_RS04000 and HSERO_RS04005 are separated by 42 nucleotides HSERO_RS04005 and HSERO_RS04010 are separated by 11 nucleotides HSERO_RS04010 and HSERO_RS04015 are separated by 247 nucleotides
HSERO_RS03995: HSERO_RS03995 - hypothetical protein, at 876,451 to 876,981
_RS03995
HSERO_RS04000: HSERO_RS04000 - type III secretion protein, at 877,075 to 877,464
_RS04000
HSERO_RS04005: HSERO_RS04005 - type III secretion protein, at 877,507 to 878,358
_RS04005
HSERO_RS04010: HSERO_RS04010 - hypothetical protein, at 878,370 to 878,840
_RS04010
HSERO_RS04015: HSERO_RS04015 - flagellar biosynthesis/type III secretory pathway protein, at 879,088 to 879,624
_RS04015
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 876.609 kb on + strand, within HSERO_RS03995 at 876.806 kb on - strand, within HSERO_RS03995 at 876.968 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.027 kb on - strand at 877.027 kb on - strand at 877.063 kb on + strand at 877.085 kb on + strand at 877.093 kb on - strand at 877.225 kb on + strand, within HSERO_RS04000 at 877.415 kb on - strand, within HSERO_RS04000 at 877.671 kb on + strand, within HSERO_RS04005 at 877.678 kb on + strand at 877.970 kb on + strand, within HSERO_RS04005 at 877.978 kb on - strand, within HSERO_RS04005 at 878.048 kb on + strand, within HSERO_RS04005 at 878.056 kb on + strand, within HSERO_RS04005 at 878.193 kb on + strand at 878.193 kb on + strand, within HSERO_RS04005 at 878.283 kb on + strand at 878.291 kb on - strand at 878.303 kb on - strand at 878.303 kb on - strand at 878.358 kb on + strand at 878.371 kb on - strand at 878.473 kb on + strand, within HSERO_RS04010 at 878.542 kb on + strand, within HSERO_RS04010 at 878.604 kb on - strand, within HSERO_RS04010 at 878.682 kb on + strand, within HSERO_RS04010 at 879.011 kb on - strand at 879.011 kb on - strand at 879.011 kb on - strand at 879.016 kb on + strand at 879.106 kb on - strand at 879.251 kb on + strand, within HSERO_RS04015
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 876,609 + HSERO_RS03995 0.30 -0.0 876,806 - HSERO_RS03995 0.67 +0.3 876,968 + +0.1 877,019 + -0.5 877,019 + +0.5 877,019 + -0.6 877,027 - +1.6 877,027 - +0.1 877,063 + +0.2 877,085 + -0.4 877,093 - +1.4 877,225 + HSERO_RS04000 0.38 +0.2 877,415 - HSERO_RS04000 0.87 +0.5 877,671 + HSERO_RS04005 0.19 +0.5 877,678 + -0.0 877,970 + HSERO_RS04005 0.54 +0.1 877,978 - HSERO_RS04005 0.55 -0.6 878,048 + HSERO_RS04005 0.63 +4.1 878,056 + HSERO_RS04005 0.64 +1.8 878,193 + +2.0 878,193 + HSERO_RS04005 0.81 -1.8 878,283 + -0.2 878,291 - -1.5 878,303 - +1.7 878,303 - +0.5 878,358 + +0.5 878,371 - +1.2 878,473 + HSERO_RS04010 0.22 +0.1 878,542 + HSERO_RS04010 0.37 -0.2 878,604 - HSERO_RS04010 0.50 +0.1 878,682 + HSERO_RS04010 0.66 -0.2 879,011 - -0.1 879,011 - +1.5 879,011 - +0.2 879,016 + -0.3 879,106 - +0.2 879,251 + HSERO_RS04015 0.30 +0.5
Or see this region's nucleotide sequence