Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03790 and HSERO_RS03795 are separated by 39 nucleotides HSERO_RS03795 and HSERO_RS03800 are separated by 90 nucleotides HSERO_RS03800 and HSERO_RS03805 are separated by 534 nucleotides HSERO_RS03805 and HSERO_RS03810 are separated by 118 nucleotides
HSERO_RS03790: HSERO_RS03790 - hypothetical protein, at 837,325 to 838,851
_RS03790
HSERO_RS03795: HSERO_RS03795 - hypothetical protein, at 838,891 to 839,148
_RS03795
HSERO_RS03800: HSERO_RS03800 - hypothetical protein, at 839,239 to 840,078
_RS03800
HSERO_RS03805: HSERO_RS03805 - hypothetical protein, at 840,613 to 840,828
_RS03805
HSERO_RS03810: HSERO_RS03810 - hypothetical protein, at 840,947 to 841,798
_RS03810
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 838.354 kb on + strand, within HSERO_RS03790 at 838.462 kb on + strand, within HSERO_RS03790 at 838.682 kb on + strand, within HSERO_RS03790 at 838.695 kb on + strand, within HSERO_RS03790 at 838.755 kb on + strand at 839.519 kb on + strand, within HSERO_RS03800 at 839.519 kb on + strand, within HSERO_RS03800 at 839.578 kb on - strand, within HSERO_RS03800 at 839.647 kb on - strand, within HSERO_RS03800 at 839.713 kb on + strand, within HSERO_RS03800 at 839.757 kb on + strand, within HSERO_RS03800 at 839.824 kb on + strand, within HSERO_RS03800 at 839.824 kb on - strand, within HSERO_RS03800 at 839.847 kb on + strand, within HSERO_RS03800 at 839.847 kb on + strand, within HSERO_RS03800 at 839.906 kb on + strand, within HSERO_RS03800 at 839.953 kb on - strand, within HSERO_RS03800 at 839.955 kb on + strand, within HSERO_RS03800 at 840.108 kb on - strand at 840.110 kb on + strand at 840.110 kb on + strand at 840.118 kb on - strand at 840.138 kb on + strand at 840.138 kb on + strand at 840.227 kb on - strand at 840.460 kb on - strand at 840.564 kb on + strand at 840.653 kb on - strand, within HSERO_RS03805 at 840.704 kb on + strand, within HSERO_RS03805 at 840.712 kb on - strand, within HSERO_RS03805 at 840.840 kb on - strand at 840.891 kb on - strand at 840.891 kb on - strand at 840.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 838,354 + HSERO_RS03790 0.67 +1.0 838,462 + HSERO_RS03790 0.74 +2.6 838,682 + HSERO_RS03790 0.89 -0.4 838,695 + HSERO_RS03790 0.90 +1.3 838,755 + +1.0 839,519 + HSERO_RS03800 0.33 +1.4 839,519 + HSERO_RS03800 0.33 -0.9 839,578 - HSERO_RS03800 0.40 -0.0 839,647 - HSERO_RS03800 0.49 -0.1 839,713 + HSERO_RS03800 0.56 +1.0 839,757 + HSERO_RS03800 0.62 +0.6 839,824 + HSERO_RS03800 0.70 +0.9 839,824 - HSERO_RS03800 0.70 +0.3 839,847 + HSERO_RS03800 0.72 +1.7 839,847 + HSERO_RS03800 0.72 -0.7 839,906 + HSERO_RS03800 0.79 +0.2 839,953 - HSERO_RS03800 0.85 +3.5 839,955 + HSERO_RS03800 0.85 +0.7 840,108 - -0.8 840,110 + -0.2 840,110 + +0.0 840,118 - -0.3 840,138 + +0.7 840,138 + +0.3 840,227 - +0.1 840,460 - +0.3 840,564 + +0.4 840,653 - HSERO_RS03805 0.19 +1.6 840,704 + HSERO_RS03805 0.42 -0.2 840,712 - HSERO_RS03805 0.46 -0.9 840,840 - +0.7 840,891 - -1.1 840,891 - -0.7 840,971 - -1.9
Or see this region's nucleotide sequence