Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03770 and HSERO_RS03775 are separated by 145 nucleotides HSERO_RS03775 and HSERO_RS03780 are separated by 27 nucleotides
HSERO_RS03770: HSERO_RS03770 - type VI secretion protein, at 830,344 to 831,471
_RS03770
HSERO_RS03775: HSERO_RS03775 - cell envelope biogenesis protein OmpA, at 831,617 to 832,408
_RS03775
HSERO_RS03780: HSERO_RS03780 - type VI secretion protein, at 832,436 to 833,422
_RS03780
Position (kb) 831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 830.749 kb on - strand, within HSERO_RS03770 at 830.834 kb on + strand, within HSERO_RS03770 at 830.969 kb on + strand, within HSERO_RS03770 at 831.139 kb on - strand, within HSERO_RS03770 at 831.146 kb on + strand, within HSERO_RS03770 at 831.154 kb on + strand, within HSERO_RS03770 at 831.280 kb on + strand, within HSERO_RS03770 at 831.390 kb on + strand at 831.390 kb on + strand at 831.398 kb on - strand at 831.534 kb on + strand at 831.563 kb on - strand at 831.599 kb on + strand at 831.609 kb on + strand at 831.609 kb on + strand at 831.669 kb on - strand at 831.703 kb on + strand, within HSERO_RS03775 at 831.703 kb on + strand, within HSERO_RS03775 at 831.722 kb on + strand, within HSERO_RS03775 at 831.760 kb on - strand, within HSERO_RS03775 at 831.914 kb on - strand, within HSERO_RS03775 at 831.916 kb on + strand, within HSERO_RS03775 at 831.970 kb on + strand, within HSERO_RS03775 at 831.978 kb on - strand, within HSERO_RS03775 at 832.234 kb on - strand, within HSERO_RS03775 at 832.365 kb on + strand at 832.378 kb on - strand at 832.378 kb on - strand at 832.416 kb on - strand at 832.441 kb on - strand at 832.445 kb on + strand at 832.517 kb on + strand at 832.598 kb on - strand, within HSERO_RS03780 at 832.598 kb on - strand, within HSERO_RS03780 at 832.659 kb on - strand at 832.717 kb on + strand, within HSERO_RS03780 at 832.854 kb on - strand, within HSERO_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 830,749 - HSERO_RS03770 0.36 +0.2 830,834 + HSERO_RS03770 0.43 +1.6 830,969 + HSERO_RS03770 0.55 +1.5 831,139 - HSERO_RS03770 0.70 +1.3 831,146 + HSERO_RS03770 0.71 +2.3 831,154 + HSERO_RS03770 0.72 +1.1 831,280 + HSERO_RS03770 0.83 +1.1 831,390 + +2.9 831,390 + +1.2 831,398 - +0.9 831,534 + +0.1 831,563 - -0.2 831,599 + +0.3 831,609 + +0.6 831,609 + +0.8 831,669 - -0.3 831,703 + HSERO_RS03775 0.11 +0.6 831,703 + HSERO_RS03775 0.11 +1.3 831,722 + HSERO_RS03775 0.13 +0.8 831,760 - HSERO_RS03775 0.18 +0.5 831,914 - HSERO_RS03775 0.38 +0.4 831,916 + HSERO_RS03775 0.38 +1.0 831,970 + HSERO_RS03775 0.45 +0.9 831,978 - HSERO_RS03775 0.46 +0.8 832,234 - HSERO_RS03775 0.78 +0.4 832,365 + +0.0 832,378 - +0.1 832,378 - +0.3 832,416 - +0.6 832,441 - -1.6 832,445 + -0.6 832,517 + -1.9 832,598 - HSERO_RS03780 0.16 -2.1 832,598 - HSERO_RS03780 0.16 -2.8 832,659 - -1.5 832,717 + HSERO_RS03780 0.28 +0.4 832,854 - HSERO_RS03780 0.42 -2.4
Or see this region's nucleotide sequence