Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03730 and HSERO_RS03735 are separated by 111 nucleotides HSERO_RS03735 and HSERO_RS03740 are separated by 42 nucleotides HSERO_RS03740 and HSERO_RS03745 are separated by 21 nucleotides
HSERO_RS03730: HSERO_RS03730 - ATPase, at 816,027 to 818,708
_RS03730
HSERO_RS03735: HSERO_RS03735 - type VI secretion protein, at 818,820 to 821,654
_RS03735
HSERO_RS03740: HSERO_RS03740 - hypothetical protein, at 821,697 to 822,632
_RS03740
HSERO_RS03745: HSERO_RS03745 - hypothetical protein, at 822,654 to 825,866
_RS03745
Position (kb) 818
819
820
821
822 Strain fitness (log2 ratio) -1
0
1
2 at 817.900 kb on - strand, within HSERO_RS03730 at 818.039 kb on - strand, within HSERO_RS03730 at 818.169 kb on - strand, within HSERO_RS03730 at 818.269 kb on - strand at 818.893 kb on + strand at 818.972 kb on - strand at 819.050 kb on + strand at 819.327 kb on + strand, within HSERO_RS03735 at 819.395 kb on + strand, within HSERO_RS03735 at 819.459 kb on - strand, within HSERO_RS03735 at 819.459 kb on - strand, within HSERO_RS03735 at 819.474 kb on - strand, within HSERO_RS03735 at 819.555 kb on + strand, within HSERO_RS03735 at 820.136 kb on + strand, within HSERO_RS03735 at 820.169 kb on - strand, within HSERO_RS03735 at 820.169 kb on - strand, within HSERO_RS03735 at 820.206 kb on + strand, within HSERO_RS03735 at 820.285 kb on - strand, within HSERO_RS03735 at 820.564 kb on - strand, within HSERO_RS03735 at 820.612 kb on + strand, within HSERO_RS03735 at 820.647 kb on + strand, within HSERO_RS03735 at 820.781 kb on + strand, within HSERO_RS03735 at 820.839 kb on + strand, within HSERO_RS03735 at 821.022 kb on + strand, within HSERO_RS03735 at 821.029 kb on + strand, within HSERO_RS03735 at 821.029 kb on + strand at 821.029 kb on + strand, within HSERO_RS03735 at 821.029 kb on + strand, within HSERO_RS03735 at 821.029 kb on + strand, within HSERO_RS03735 at 821.037 kb on - strand, within HSERO_RS03735 at 821.039 kb on + strand, within HSERO_RS03735 at 821.085 kb on + strand, within HSERO_RS03735 at 821.383 kb on + strand at 821.414 kb on + strand at 821.450 kb on - strand at 821.573 kb on - strand at 821.584 kb on + strand at 821.993 kb on + strand, within HSERO_RS03740 at 822.160 kb on + strand, within HSERO_RS03740 at 822.211 kb on + strand, within HSERO_RS03740 at 822.245 kb on + strand, within HSERO_RS03740 at 822.648 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 817,900 - HSERO_RS03730 0.70 -0.2 818,039 - HSERO_RS03730 0.75 +0.2 818,169 - HSERO_RS03730 0.80 -0.8 818,269 - +1.1 818,893 + +0.2 818,972 - -0.7 819,050 + -0.1 819,327 + HSERO_RS03735 0.18 +0.5 819,395 + HSERO_RS03735 0.20 -0.7 819,459 - HSERO_RS03735 0.23 -0.3 819,459 - HSERO_RS03735 0.23 +1.0 819,474 - HSERO_RS03735 0.23 +0.4 819,555 + HSERO_RS03735 0.26 +0.7 820,136 + HSERO_RS03735 0.46 +0.9 820,169 - HSERO_RS03735 0.48 +0.5 820,169 - HSERO_RS03735 0.48 +0.3 820,206 + HSERO_RS03735 0.49 +0.0 820,285 - HSERO_RS03735 0.52 +0.4 820,564 - HSERO_RS03735 0.62 +0.5 820,612 + HSERO_RS03735 0.63 +1.9 820,647 + HSERO_RS03735 0.64 +2.3 820,781 + HSERO_RS03735 0.69 +1.0 820,839 + HSERO_RS03735 0.71 +1.4 821,022 + HSERO_RS03735 0.78 -0.2 821,029 + HSERO_RS03735 0.78 +0.4 821,029 + -0.9 821,029 + HSERO_RS03735 0.78 +2.3 821,029 + HSERO_RS03735 0.78 +1.2 821,029 + HSERO_RS03735 0.78 +0.7 821,037 - HSERO_RS03735 0.78 +0.5 821,039 + HSERO_RS03735 0.78 +0.2 821,085 + HSERO_RS03735 0.80 +1.1 821,383 + +2.6 821,414 + +0.9 821,450 - -0.1 821,573 - +0.4 821,584 + +0.4 821,993 + HSERO_RS03740 0.32 -0.1 822,160 + HSERO_RS03740 0.49 +0.1 822,211 + HSERO_RS03740 0.55 +0.2 822,245 + HSERO_RS03740 0.59 -0.5 822,648 + +1.3
Or see this region's nucleotide sequence