Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03705 and HSERO_RS03710 are separated by 32 nucleotides HSERO_RS03710 and HSERO_RS03715 are separated by 142 nucleotides HSERO_RS03715 and HSERO_RS03720 are separated by 0 nucleotides
HSERO_RS03705: HSERO_RS03705 - EvpB family type VI secretion protein, at 810,454 to 811,941
_RS03705
HSERO_RS03710: HSERO_RS03710 - hypothetical protein, at 811,974 to 812,465
_RS03710
HSERO_RS03715: HSERO_RS03715 - type VI secretion protein, at 812,608 to 813,096
_RS03715
HSERO_RS03720: HSERO_RS03720 - type VI secretion protein, at 813,097 to 814,941
_RS03720
Position (kb) 812
813
814 Strain fitness (log2 ratio) -1
0
1 at 811.813 kb on - strand at 812.675 kb on - strand, within HSERO_RS03715 at 812.874 kb on - strand, within HSERO_RS03715 at 812.933 kb on + strand, within HSERO_RS03715 at 813.431 kb on + strand, within HSERO_RS03720 at 813.439 kb on - strand, within HSERO_RS03720 at 813.461 kb on - strand, within HSERO_RS03720 at 813.611 kb on + strand, within HSERO_RS03720 at 813.611 kb on + strand, within HSERO_RS03720 at 813.694 kb on - strand, within HSERO_RS03720 at 813.719 kb on + strand, within HSERO_RS03720 at 813.741 kb on + strand, within HSERO_RS03720 at 813.906 kb on - strand, within HSERO_RS03720 at 813.924 kb on - strand at 813.965 kb on - strand, within HSERO_RS03720 at 813.994 kb on - strand, within HSERO_RS03720 at 814.017 kb on - strand, within HSERO_RS03720 at 814.088 kb on + strand, within HSERO_RS03720
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 811,813 - +0.2 812,675 - HSERO_RS03715 0.14 +0.8 812,874 - HSERO_RS03715 0.54 +0.4 812,933 + HSERO_RS03715 0.66 +1.0 813,431 + HSERO_RS03720 0.18 -0.5 813,439 - HSERO_RS03720 0.19 -1.2 813,461 - HSERO_RS03720 0.20 +0.2 813,611 + HSERO_RS03720 0.28 +0.8 813,611 + HSERO_RS03720 0.28 +0.4 813,694 - HSERO_RS03720 0.32 -0.2 813,719 + HSERO_RS03720 0.34 -0.1 813,741 + HSERO_RS03720 0.35 +1.2 813,906 - HSERO_RS03720 0.44 +1.3 813,924 - +0.9 813,965 - HSERO_RS03720 0.47 +0.5 813,994 - HSERO_RS03720 0.49 -1.2 814,017 - HSERO_RS03720 0.50 -0.9 814,088 + HSERO_RS03720 0.54 +1.0
Or see this region's nucleotide sequence