Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03690 and HSERO_RS03695 are separated by 409 nucleotides HSERO_RS03695 and HSERO_RS03700 are separated by 84 nucleotides HSERO_RS03700 and HSERO_RS03705 are separated by 11 nucleotides
HSERO_RS03690: HSERO_RS03690 - membrane protein, at 808,195 to 808,818
_RS03690
HSERO_RS03695: HSERO_RS03695 - hypothetical protein, at 809,228 to 809,857
_RS03695
HSERO_RS03700: HSERO_RS03700 - type VI secretion protein, at 809,942 to 810,442
_RS03700
HSERO_RS03705: HSERO_RS03705 - EvpB family type VI secretion protein, at 810,454 to 811,941
_RS03705
Position (kb) 809
810 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 808.278 kb on + strand, within HSERO_RS03690 at 808.300 kb on - strand, within HSERO_RS03690 at 808.457 kb on + strand, within HSERO_RS03690 at 808.466 kb on - strand, within HSERO_RS03690 at 808.482 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.487 kb on + strand, within HSERO_RS03690 at 808.490 kb on - strand, within HSERO_RS03690 at 808.495 kb on - strand, within HSERO_RS03690 at 808.500 kb on + strand, within HSERO_RS03690 at 808.558 kb on - strand, within HSERO_RS03690 at 808.607 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.618 kb on - strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.623 kb on + strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.631 kb on - strand, within HSERO_RS03690 at 808.638 kb on + strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.650 kb on - strand, within HSERO_RS03690 at 808.652 kb on + strand, within HSERO_RS03690 at 808.665 kb on - strand, within HSERO_RS03690 at 808.828 kb on + strand at 808.828 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.833 kb on + strand at 808.836 kb on - strand at 808.836 kb on - strand at 808.841 kb on - strand at 808.841 kb on - strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.861 kb on + strand at 808.869 kb on + strand at 808.871 kb on + strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.873 kb on - strand at 808.913 kb on - strand at 808.918 kb on + strand at 808.918 kb on - strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on + strand at 808.921 kb on - strand at 808.924 kb on - strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on + strand at 808.926 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.929 kb on - strand at 808.931 kb on + strand at 808.931 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.934 kb on - strand at 808.935 kb on + strand at 808.938 kb on + strand at 808.939 kb on - strand at 808.943 kb on + strand at 808.943 kb on + strand at 808.961 kb on - strand at 808.966 kb on - strand at 809.023 kb on - strand at 809.099 kb on + strand at 809.115 kb on - strand at 809.119 kb on - strand at 809.122 kb on + strand at 809.122 kb on + strand at 809.130 kb on - strand at 809.130 kb on - strand at 809.136 kb on + strand at 809.146 kb on + strand at 809.147 kb on + strand at 809.154 kb on + strand at 809.155 kb on - strand at 809.155 kb on - strand at 809.157 kb on - strand at 809.164 kb on + strand at 809.172 kb on - strand at 809.216 kb on + strand at 809.218 kb on - strand at 809.224 kb on - strand at 809.241 kb on - strand at 809.241 kb on - strand at 809.252 kb on + strand at 809.252 kb on + strand at 809.260 kb on - strand at 809.265 kb on - strand at 809.267 kb on + strand at 809.275 kb on - strand at 809.296 kb on + strand, within HSERO_RS03695 at 809.308 kb on + strand, within HSERO_RS03695 at 809.332 kb on + strand, within HSERO_RS03695 at 809.341 kb on - strand, within HSERO_RS03695 at 809.341 kb on - strand, within HSERO_RS03695 at 809.365 kb on + strand, within HSERO_RS03695 at 809.373 kb on - strand, within HSERO_RS03695 at 809.476 kb on - strand, within HSERO_RS03695 at 809.662 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.745 kb on - strand, within HSERO_RS03695 at 809.760 kb on - strand, within HSERO_RS03695 at 809.795 kb on + strand at 809.829 kb on + strand at 809.923 kb on - strand at 809.980 kb on + strand at 810.165 kb on - strand, within HSERO_RS03700 at 810.542 kb on - strand at 810.559 kb on + strand at 810.562 kb on - strand at 810.577 kb on - strand at 810.610 kb on - strand, within HSERO_RS03705 at 810.667 kb on + strand, within HSERO_RS03705 at 810.688 kb on + strand, within HSERO_RS03705 at 810.748 kb on + strand, within HSERO_RS03705 at 810.748 kb on + strand, within HSERO_RS03705 at 810.761 kb on - strand, within HSERO_RS03705 at 810.814 kb on + strand, within HSERO_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 808,278 + HSERO_RS03690 0.13 +0.9 808,300 - HSERO_RS03690 0.17 +0.4 808,457 + HSERO_RS03690 0.42 +1.1 808,466 - HSERO_RS03690 0.43 +1.3 808,482 + HSERO_RS03690 0.46 +1.1 808,487 + HSERO_RS03690 0.47 +1.0 808,487 + HSERO_RS03690 0.47 +4.4 808,490 - HSERO_RS03690 0.47 -0.3 808,495 - HSERO_RS03690 0.48 -0.0 808,500 + HSERO_RS03690 0.49 +1.3 808,558 - HSERO_RS03690 0.58 +0.1 808,607 - HSERO_RS03690 0.66 +0.4 808,618 - HSERO_RS03690 0.68 +0.3 808,618 - HSERO_RS03690 0.68 +1.4 808,623 + HSERO_RS03690 0.69 +0.6 808,623 + HSERO_RS03690 0.69 +1.1 808,631 - HSERO_RS03690 0.70 +0.3 808,631 - HSERO_RS03690 0.70 +0.0 808,631 - HSERO_RS03690 0.70 +0.8 808,638 + HSERO_RS03690 0.71 +1.3 808,650 - HSERO_RS03690 0.73 +1.1 808,650 - HSERO_RS03690 0.73 +0.2 808,652 + HSERO_RS03690 0.73 +1.7 808,665 - HSERO_RS03690 0.75 +0.6 808,828 + +1.0 808,828 + +0.8 808,833 + +0.5 808,833 + +0.9 808,833 + +1.0 808,833 + +1.3 808,833 + +1.4 808,833 + +0.8 808,836 - +1.1 808,836 - -0.2 808,841 - -0.7 808,841 - +0.8 808,861 + +1.1 808,861 + +1.8 808,861 + +0.6 808,861 + +0.2 808,861 + +0.2 808,861 + +0.7 808,869 + +1.9 808,871 + +0.1 808,873 - +0.9 808,873 - +0.9 808,873 - +1.1 808,913 - +1.6 808,918 + +0.6 808,918 - +0.8 808,921 + +1.5 808,921 + +1.6 808,921 + +2.3 808,921 + +0.6 808,921 + +1.6 808,921 + +1.5 808,921 + +1.1 808,921 + +0.8 808,921 + +0.9 808,921 - +0.4 808,924 - +5.5 808,926 + +0.4 808,926 + +0.5 808,926 + +1.3 808,926 + +0.8 808,926 + +1.1 808,926 - -0.7 808,929 - +1.3 808,929 - +1.0 808,929 - -0.0 808,929 - -0.1 808,929 - +0.7 808,929 - +1.1 808,929 - +1.2 808,931 + +1.2 808,931 - +0.2 808,934 - +0.1 808,934 - +0.6 808,934 - +0.6 808,934 - +0.0 808,935 + +0.9 808,938 + +1.0 808,939 - -0.3 808,943 + +3.1 808,943 + +0.9 808,961 - -1.9 808,966 - -0.0 809,023 - +0.3 809,099 + +1.2 809,115 - +1.3 809,119 - -0.6 809,122 + +0.2 809,122 + +1.3 809,130 - +1.2 809,130 - +1.2 809,136 + +0.8 809,146 + +0.2 809,147 + +0.8 809,154 + +0.6 809,155 - +0.7 809,155 - -0.5 809,157 - +0.3 809,164 + +1.4 809,172 - +0.4 809,216 + +1.7 809,218 - +0.8 809,224 - +1.4 809,241 - +0.3 809,241 - -1.2 809,252 + +1.1 809,252 + +0.5 809,260 - -0.3 809,265 - +0.4 809,267 + +0.9 809,275 - +0.3 809,296 + HSERO_RS03695 0.11 +0.9 809,308 + HSERO_RS03695 0.13 +1.4 809,332 + HSERO_RS03695 0.17 +1.6 809,341 - HSERO_RS03695 0.18 +0.8 809,341 - HSERO_RS03695 0.18 +0.8 809,365 + HSERO_RS03695 0.22 +0.3 809,373 - HSERO_RS03695 0.23 +0.6 809,476 - HSERO_RS03695 0.39 -0.6 809,662 - HSERO_RS03695 0.69 +0.1 809,745 - HSERO_RS03695 0.82 +0.6 809,745 - HSERO_RS03695 0.82 +0.6 809,760 - HSERO_RS03695 0.84 +1.6 809,795 + +1.4 809,829 + +2.0 809,923 - +0.9 809,980 + +2.7 810,165 - HSERO_RS03700 0.45 +0.3 810,542 - +0.5 810,559 + +0.8 810,562 - +0.1 810,577 - +0.9 810,610 - HSERO_RS03705 0.10 -0.4 810,667 + HSERO_RS03705 0.14 +1.0 810,688 + HSERO_RS03705 0.16 +0.5 810,748 + HSERO_RS03705 0.20 -0.9 810,748 + HSERO_RS03705 0.20 -0.2 810,761 - HSERO_RS03705 0.21 -0.0 810,814 + HSERO_RS03705 0.24 +0.9
Or see this region's nucleotide sequence