Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03480 and HSERO_RS03485 are separated by 85 nucleotides HSERO_RS03485 and HSERO_RS03490 are separated by 70 nucleotides HSERO_RS03490 and HSERO_RS03495 overlap by 4 nucleotides HSERO_RS03495 and HSERO_RS03500 are separated by 90 nucleotides HSERO_RS03500 and HSERO_RS03505 are separated by 123 nucleotides
HSERO_RS03480: HSERO_RS03480 - NAD(P) transhydrogenase subunit alpha, at 757,691 to 758,806
_RS03480
HSERO_RS03485: HSERO_RS03485 - aspartate decarboxylase, at 758,892 to 759,254
_RS03485
HSERO_RS03490: HSERO_RS03490 - NAD(P) transhydrogenase, at 759,325 to 759,639
_RS03490
HSERO_RS03495: HSERO_RS03495 - NAD(P) transhydrogenase subunit beta, at 759,636 to 761,075
_RS03495
HSERO_RS03500: HSERO_RS03500 - uracil phosphoribosyltransferase, at 761,166 to 761,813
_RS03500
HSERO_RS03505: HSERO_RS03505 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 761,937 to 763,085
_RS03505
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 758.653 kb on + strand, within HSERO_RS03480 at 758.743 kb on - strand at 758.859 kb on - strand at 759.343 kb on - strand at 759.482 kb on + strand, within HSERO_RS03490 at 759.615 kb on + strand at 759.657 kb on + strand at 759.710 kb on - strand at 759.797 kb on + strand, within HSERO_RS03495 at 760.004 kb on + strand, within HSERO_RS03495 at 760.086 kb on - strand, within HSERO_RS03495 at 760.142 kb on + strand, within HSERO_RS03495 at 760.142 kb on + strand, within HSERO_RS03495 at 760.142 kb on + strand, within HSERO_RS03495 at 760.142 kb on + strand, within HSERO_RS03495 at 760.414 kb on - strand, within HSERO_RS03495 at 760.456 kb on - strand, within HSERO_RS03495 at 760.635 kb on - strand, within HSERO_RS03495 at 760.640 kb on - strand, within HSERO_RS03495 at 760.771 kb on - strand, within HSERO_RS03495 at 760.816 kb on - strand, within HSERO_RS03495 at 760.829 kb on + strand, within HSERO_RS03495 at 760.873 kb on - strand, within HSERO_RS03495 at 760.939 kb on - strand at 761.074 kb on + strand at 761.334 kb on - strand, within HSERO_RS03500 at 761.342 kb on + strand, within HSERO_RS03500 at 761.457 kb on + strand, within HSERO_RS03500 at 761.662 kb on - strand, within HSERO_RS03500 at 761.786 kb on + strand at 761.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 758,653 + HSERO_RS03480 0.86 +0.4 758,743 - +0.9 758,859 - +0.7 759,343 - -0.6 759,482 + HSERO_RS03490 0.50 +0.9 759,615 + +0.5 759,657 + +0.5 759,710 - -2.5 759,797 + HSERO_RS03495 0.11 -0.5 760,004 + HSERO_RS03495 0.26 +0.8 760,086 - HSERO_RS03495 0.31 +0.0 760,142 + HSERO_RS03495 0.35 +0.3 760,142 + HSERO_RS03495 0.35 +0.2 760,142 + HSERO_RS03495 0.35 +0.0 760,142 + HSERO_RS03495 0.35 +0.1 760,414 - HSERO_RS03495 0.54 +0.5 760,456 - HSERO_RS03495 0.57 -0.1 760,635 - HSERO_RS03495 0.69 -0.6 760,640 - HSERO_RS03495 0.70 +6.6 760,771 - HSERO_RS03495 0.79 +2.7 760,816 - HSERO_RS03495 0.82 +0.6 760,829 + HSERO_RS03495 0.83 -0.1 760,873 - HSERO_RS03495 0.86 -0.3 760,939 - -1.0 761,074 + +0.5 761,334 - HSERO_RS03500 0.26 -1.5 761,342 + HSERO_RS03500 0.27 -1.2 761,457 + HSERO_RS03500 0.45 -3.4 761,662 - HSERO_RS03500 0.77 +0.3 761,786 + -0.2 761,829 + +0.2
Or see this region's nucleotide sequence