Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02980 and HSERO_RS02985 are separated by 481 nucleotides HSERO_RS02985 and HSERO_RS02990 are separated by 47 nucleotides
HSERO_RS02980: HSERO_RS02980 - leucyl-tRNA synthetase, at 652,511 to 655,159
_RS02980
HSERO_RS02985: HSERO_RS02985 - transcriptional regulator, at 655,641 to 656,717
_RS02985
HSERO_RS02990: HSERO_RS02990 - ABC transporter substrate-binding protein, at 656,765 to 657,772
_RS02990
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 655.222 kb on - strand at 655.246 kb on - strand at 655.328 kb on + strand at 655.344 kb on + strand at 655.426 kb on + strand at 655.434 kb on - strand at 655.434 kb on - strand at 655.562 kb on + strand at 655.569 kb on - strand at 655.570 kb on - strand at 655.580 kb on - strand at 655.627 kb on + strand at 655.635 kb on - strand at 655.752 kb on + strand, within HSERO_RS02985 at 655.858 kb on - strand, within HSERO_RS02985 at 655.858 kb on - strand, within HSERO_RS02985 at 655.882 kb on + strand, within HSERO_RS02985 at 655.933 kb on + strand, within HSERO_RS02985 at 655.973 kb on + strand, within HSERO_RS02985 at 656.105 kb on - strand, within HSERO_RS02985 at 656.348 kb on + strand, within HSERO_RS02985 at 656.440 kb on + strand, within HSERO_RS02985 at 656.440 kb on + strand, within HSERO_RS02985 at 656.511 kb on + strand, within HSERO_RS02985 at 656.516 kb on + strand, within HSERO_RS02985 at 656.657 kb on + strand at 656.675 kb on - strand at 656.822 kb on - strand at 656.841 kb on - strand at 656.893 kb on - strand, within HSERO_RS02990 at 656.898 kb on - strand, within HSERO_RS02990 at 656.961 kb on - strand, within HSERO_RS02990 at 656.962 kb on - strand, within HSERO_RS02990 at 656.990 kb on + strand, within HSERO_RS02990 at 657.066 kb on - strand, within HSERO_RS02990 at 657.103 kb on + strand, within HSERO_RS02990 at 657.119 kb on - strand, within HSERO_RS02990 at 657.190 kb on + strand, within HSERO_RS02990 at 657.190 kb on + strand, within HSERO_RS02990 at 657.190 kb on + strand, within HSERO_RS02990 at 657.190 kb on + strand, within HSERO_RS02990 at 657.198 kb on - strand, within HSERO_RS02990 at 657.215 kb on + strand, within HSERO_RS02990 at 657.296 kb on - strand, within HSERO_RS02990 at 657.345 kb on - strand, within HSERO_RS02990 at 657.392 kb on + strand, within HSERO_RS02990 at 657.399 kb on + strand, within HSERO_RS02990 at 657.514 kb on - strand, within HSERO_RS02990 at 657.601 kb on + strand at 657.646 kb on + strand, within HSERO_RS02990
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 655,222 - -0.6 655,246 - +0.3 655,328 + +0.7 655,344 + +1.3 655,426 + +0.6 655,434 - -0.5 655,434 - -0.1 655,562 + -1.0 655,569 - -0.1 655,570 - +0.4 655,580 - +0.3 655,627 + -0.9 655,635 - +0.1 655,752 + HSERO_RS02985 0.10 +0.7 655,858 - HSERO_RS02985 0.20 +1.2 655,858 - HSERO_RS02985 0.20 -0.5 655,882 + HSERO_RS02985 0.22 +0.1 655,933 + HSERO_RS02985 0.27 +1.2 655,973 + HSERO_RS02985 0.31 +0.5 656,105 - HSERO_RS02985 0.43 +4.4 656,348 + HSERO_RS02985 0.66 +1.4 656,440 + HSERO_RS02985 0.74 +0.7 656,440 + HSERO_RS02985 0.74 +0.1 656,511 + HSERO_RS02985 0.81 -2.0 656,516 + HSERO_RS02985 0.81 +0.3 656,657 + -0.4 656,675 - +1.1 656,822 - -0.4 656,841 - +0.8 656,893 - HSERO_RS02990 0.13 -1.5 656,898 - HSERO_RS02990 0.13 -0.0 656,961 - HSERO_RS02990 0.19 +1.3 656,962 - HSERO_RS02990 0.20 +1.8 656,990 + HSERO_RS02990 0.22 +0.0 657,066 - HSERO_RS02990 0.30 +0.4 657,103 + HSERO_RS02990 0.34 -0.3 657,119 - HSERO_RS02990 0.35 +0.7 657,190 + HSERO_RS02990 0.42 -0.2 657,190 + HSERO_RS02990 0.42 +0.9 657,190 + HSERO_RS02990 0.42 -0.0 657,190 + HSERO_RS02990 0.42 -0.3 657,198 - HSERO_RS02990 0.43 +0.4 657,215 + HSERO_RS02990 0.45 +0.0 657,296 - HSERO_RS02990 0.53 -1.5 657,345 - HSERO_RS02990 0.58 -0.6 657,392 + HSERO_RS02990 0.62 -0.5 657,399 + HSERO_RS02990 0.63 -0.2 657,514 - HSERO_RS02990 0.74 +0.2 657,601 + +1.6 657,646 + HSERO_RS02990 0.87 +0.3
Or see this region's nucleotide sequence