Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02245

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02240 and HSERO_RS02245 are separated by 185 nucleotidesHSERO_RS02245 and HSERO_RS02250 are separated by 130 nucleotides HSERO_RS02240: HSERO_RS02240 - homoserine kinase, at 489,761 to 490,717 _RS02240 HSERO_RS02245: HSERO_RS02245 - hypothetical protein, at 490,903 to 491,343 _RS02245 HSERO_RS02250: HSERO_RS02250 - hypothetical protein, at 491,474 to 492,166 _RS02250 Position (kb) 490 491 492Strain fitness (log2 ratio) -2 -1 0 1 2at 490.003 kb on - strand, within HSERO_RS02240at 490.909 kb on - strandat 491.043 kb on - strand, within HSERO_RS02245at 491.075 kb on - strand, within HSERO_RS02245at 491.095 kb on - strand, within HSERO_RS02245at 491.326 kb on + strandat 491.392 kb on + strandat 491.446 kb on - strandat 491.495 kb on + strandat 491.503 kb on - strandat 491.713 kb on + strand, within HSERO_RS02250at 491.850 kb on - strand, within HSERO_RS02250at 491.945 kb on - strand, within HSERO_RS02250at 491.960 kb on + strand, within HSERO_RS02250at 492.018 kb on + strand, within HSERO_RS02250at 492.123 kb on + strandat 492.124 kb on + strandat 492.175 kb on + strandat 492.270 kb on + strandat 492.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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490,003 - HSERO_RS02240 0.25 +1.6
490,909 - -0.1
491,043 - HSERO_RS02245 0.32 -0.2
491,075 - HSERO_RS02245 0.39 +2.1
491,095 - HSERO_RS02245 0.44 +1.7
491,326 + -0.9
491,392 + +0.2
491,446 - +0.1
491,495 + -0.8
491,503 - -1.0
491,713 + HSERO_RS02250 0.34 +0.7
491,850 - HSERO_RS02250 0.54 +0.4
491,945 - HSERO_RS02250 0.68 +0.6
491,960 + HSERO_RS02250 0.70 -0.1
492,018 + HSERO_RS02250 0.78 -0.2
492,123 + +1.1
492,124 + -0.4
492,175 + -0.4
492,270 + +2.4
492,270 + -2.1

Or see this region's nucleotide sequence