Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01205 and HSERO_RS01210 are separated by 251 nucleotides HSERO_RS01210 and HSERO_RS01215 overlap by 4 nucleotides
HSERO_RS01205: HSERO_RS01205 - 2-hydroxy-acid oxidase, at 248,933 to 250,114
_RS01205
HSERO_RS01210: HSERO_RS01210 - GntR family transcriptional regulator, at 250,366 to 251,085
_RS01210
HSERO_RS01215: HSERO_RS01215 - hypothetical protein, at 251,082 to 252,704
_RS01215
Position (kb) 250
251
252 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 249.372 kb on + strand, within HSERO_RS01205 at 249.372 kb on + strand, within HSERO_RS01205 at 249.377 kb on + strand, within HSERO_RS01205 at 249.380 kb on - strand, within HSERO_RS01205 at 249.434 kb on + strand, within HSERO_RS01205 at 249.452 kb on - strand, within HSERO_RS01205 at 249.489 kb on + strand, within HSERO_RS01205 at 249.537 kb on - strand, within HSERO_RS01205 at 249.547 kb on + strand, within HSERO_RS01205 at 249.580 kb on + strand, within HSERO_RS01205 at 249.713 kb on - strand, within HSERO_RS01205 at 249.723 kb on + strand, within HSERO_RS01205 at 249.953 kb on + strand, within HSERO_RS01205 at 249.961 kb on - strand, within HSERO_RS01205 at 250.067 kb on + strand at 250.189 kb on - strand at 250.311 kb on + strand at 250.334 kb on + strand at 250.350 kb on - strand at 250.430 kb on - strand at 250.622 kb on - strand, within HSERO_RS01210 at 250.652 kb on + strand, within HSERO_RS01210 at 250.672 kb on - strand, within HSERO_RS01210 at 251.158 kb on - strand at 251.255 kb on - strand, within HSERO_RS01215 at 251.771 kb on + strand, within HSERO_RS01215 at 251.777 kb on + strand, within HSERO_RS01215 at 251.777 kb on + strand, within HSERO_RS01215 at 251.865 kb on + strand, within HSERO_RS01215 at 251.896 kb on + strand, within HSERO_RS01215 at 251.901 kb on + strand, within HSERO_RS01215 at 251.916 kb on + strand, within HSERO_RS01215 at 251.919 kb on - strand, within HSERO_RS01215 at 251.947 kb on - strand, within HSERO_RS01215 at 252.043 kb on - strand, within HSERO_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 249,372 + HSERO_RS01205 0.37 +0.6 249,372 + HSERO_RS01205 0.37 -1.5 249,377 + HSERO_RS01205 0.38 -0.0 249,380 - HSERO_RS01205 0.38 -0.8 249,434 + HSERO_RS01205 0.42 +0.8 249,452 - HSERO_RS01205 0.44 -0.2 249,489 + HSERO_RS01205 0.47 -0.4 249,537 - HSERO_RS01205 0.51 +1.7 249,547 + HSERO_RS01205 0.52 +0.1 249,580 + HSERO_RS01205 0.55 -0.6 249,713 - HSERO_RS01205 0.66 +0.4 249,723 + HSERO_RS01205 0.67 +0.2 249,953 + HSERO_RS01205 0.86 -0.2 249,961 - HSERO_RS01205 0.87 -1.7 250,067 + +0.3 250,189 - +0.9 250,311 + +0.9 250,334 + -0.6 250,350 - +0.9 250,430 - +0.6 250,622 - HSERO_RS01210 0.36 +0.6 250,652 + HSERO_RS01210 0.40 +0.9 250,672 - HSERO_RS01210 0.42 +1.1 251,158 - -1.9 251,255 - HSERO_RS01215 0.11 -0.2 251,771 + HSERO_RS01215 0.42 +5.2 251,777 + HSERO_RS01215 0.43 +0.2 251,777 + HSERO_RS01215 0.43 +0.9 251,865 + HSERO_RS01215 0.48 -0.6 251,896 + HSERO_RS01215 0.50 +0.1 251,901 + HSERO_RS01215 0.50 -0.9 251,916 + HSERO_RS01215 0.51 +0.5 251,919 - HSERO_RS01215 0.52 +0.7 251,947 - HSERO_RS01215 0.53 -0.5 252,043 - HSERO_RS01215 0.59 -1.8
Or see this region's nucleotide sequence