Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01045 and HSERO_RS01050 are separated by 68 nucleotides HSERO_RS01050 and HSERO_RS01055 are separated by 5 nucleotides HSERO_RS01055 and HSERO_RS01060 are separated by 41 nucleotides HSERO_RS01060 and HSERO_RS01065 are separated by 152 nucleotides HSERO_RS01065 and HSERO_RS01070 are separated by 38 nucleotides
HSERO_RS01045: HSERO_RS01045 - bacteriophage baseplate assembly protein W, at 222,666 to 223,091
_RS01045
HSERO_RS01050: HSERO_RS01050 - baseplate protein, at 223,160 to 223,744
_RS01050
HSERO_RS01055: HSERO_RS01055 - bacteriophage regulatory protein, at 223,750 to 224,766
_RS01055
HSERO_RS01060: HSERO_RS01060 - membrane protein, at 224,808 to 225,047
_RS01060
HSERO_RS01065: HSERO_RS01065 - hypothetical protein, at 225,200 to 225,595
_RS01065
HSERO_RS01070: HSERO_RS01070 - bacteriophage protein gp18 protein, at 225,634 to 227,973
_RS01070
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 222.775 kb on + strand, within HSERO_RS01045 at 222.778 kb on - strand, within HSERO_RS01045 at 222.803 kb on + strand, within HSERO_RS01045 at 222.917 kb on - strand, within HSERO_RS01045 at 222.937 kb on - strand, within HSERO_RS01045 at 222.938 kb on + strand, within HSERO_RS01045 at 223.165 kb on - strand at 223.206 kb on + strand at 223.221 kb on - strand, within HSERO_RS01050 at 223.410 kb on + strand, within HSERO_RS01050 at 223.418 kb on - strand, within HSERO_RS01050 at 223.987 kb on - strand, within HSERO_RS01055 at 223.993 kb on - strand, within HSERO_RS01055 at 224.024 kb on - strand, within HSERO_RS01055 at 224.157 kb on + strand, within HSERO_RS01055 at 224.188 kb on + strand, within HSERO_RS01055 at 224.260 kb on + strand, within HSERO_RS01055 at 224.304 kb on - strand, within HSERO_RS01055 at 224.369 kb on + strand, within HSERO_RS01055 at 224.479 kb on - strand, within HSERO_RS01055 at 224.787 kb on + strand at 224.805 kb on + strand at 224.863 kb on + strand, within HSERO_RS01060 at 224.883 kb on + strand, within HSERO_RS01060 at 224.891 kb on - strand at 224.896 kb on - strand, within HSERO_RS01060 at 224.937 kb on + strand, within HSERO_RS01060 at 224.940 kb on - strand, within HSERO_RS01060 at 225.021 kb on - strand, within HSERO_RS01060 at 225.318 kb on + strand, within HSERO_RS01065 at 225.452 kb on - strand, within HSERO_RS01065 at 225.506 kb on + strand, within HSERO_RS01065 at 225.525 kb on + strand, within HSERO_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 222,775 + HSERO_RS01045 0.26 +0.0 222,778 - HSERO_RS01045 0.26 -0.2 222,803 + HSERO_RS01045 0.32 +0.2 222,917 - HSERO_RS01045 0.59 -0.1 222,937 - HSERO_RS01045 0.64 +0.2 222,938 + HSERO_RS01045 0.64 +1.4 223,165 - -0.2 223,206 + +0.0 223,221 - HSERO_RS01050 0.10 +0.3 223,410 + HSERO_RS01050 0.43 +1.2 223,418 - HSERO_RS01050 0.44 +0.4 223,987 - HSERO_RS01055 0.23 +6.3 223,993 - HSERO_RS01055 0.24 +0.4 224,024 - HSERO_RS01055 0.27 +0.7 224,157 + HSERO_RS01055 0.40 +0.2 224,188 + HSERO_RS01055 0.43 +1.0 224,260 + HSERO_RS01055 0.50 +0.5 224,304 - HSERO_RS01055 0.54 +0.8 224,369 + HSERO_RS01055 0.61 -0.1 224,479 - HSERO_RS01055 0.72 -0.1 224,787 + +0.6 224,805 + +0.3 224,863 + HSERO_RS01060 0.23 +0.5 224,883 + HSERO_RS01060 0.31 +1.8 224,891 - +1.2 224,896 - HSERO_RS01060 0.37 +0.2 224,937 + HSERO_RS01060 0.54 -0.0 224,940 - HSERO_RS01060 0.55 -0.0 225,021 - HSERO_RS01060 0.89 -0.1 225,318 + HSERO_RS01065 0.30 +0.1 225,452 - HSERO_RS01065 0.64 +0.2 225,506 + HSERO_RS01065 0.77 +0.3 225,525 + HSERO_RS01065 0.82 -0.5
Or see this region's nucleotide sequence