Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00950 and HSERO_RS00955 are separated by 315 nucleotides HSERO_RS00955 and HSERO_RS00960 are separated by 233 nucleotides
HSERO_RS00950: HSERO_RS00950 - diaminopimelate decarboxylase, at 201,429 to 202,721
_RS00950
HSERO_RS00955: HSERO_RS00955 - Tail fiber protein, at 203,037 to 203,966
_RS00955
HSERO_RS00960: HSERO_RS00960 - sodium:solute symporter, at 204,200 to 205,657
_RS00960
Position (kb) 203
204 Strain fitness (log2 ratio) -1
0
1
2 at 202.812 kb on + strand at 203.128 kb on + strand at 203.136 kb on - strand, within HSERO_RS00955 at 203.136 kb on - strand, within HSERO_RS00955 at 203.136 kb on - strand, within HSERO_RS00955 at 203.136 kb on - strand, within HSERO_RS00955 at 203.409 kb on + strand, within HSERO_RS00955 at 203.569 kb on - strand, within HSERO_RS00955 at 203.607 kb on - strand, within HSERO_RS00955 at 203.770 kb on - strand, within HSERO_RS00955 at 203.862 kb on + strand, within HSERO_RS00955 at 203.863 kb on - strand, within HSERO_RS00955 at 203.867 kb on + strand, within HSERO_RS00955 at 203.946 kb on - strand at 204.030 kb on - strand at 204.093 kb on - strand at 204.211 kb on + strand at 204.211 kb on + strand at 204.211 kb on + strand at 204.219 kb on - strand at 204.229 kb on + strand at 204.257 kb on - strand at 204.314 kb on + strand at 204.447 kb on + strand, within HSERO_RS00960 at 204.609 kb on - strand, within HSERO_RS00960 at 204.691 kb on + strand, within HSERO_RS00960 at 204.691 kb on + strand, within HSERO_RS00960 at 204.699 kb on - strand, within HSERO_RS00960 at 204.720 kb on - strand, within HSERO_RS00960 at 204.780 kb on + strand, within HSERO_RS00960 at 204.820 kb on - strand, within HSERO_RS00960 at 204.864 kb on + strand, within HSERO_RS00960
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 202,812 + +0.1 203,128 + -0.4 203,136 - HSERO_RS00955 0.11 +0.2 203,136 - HSERO_RS00955 0.11 -0.5 203,136 - HSERO_RS00955 0.11 -0.1 203,136 - HSERO_RS00955 0.11 +1.3 203,409 + HSERO_RS00955 0.40 +1.2 203,569 - HSERO_RS00955 0.57 +0.2 203,607 - HSERO_RS00955 0.61 +1.0 203,770 - HSERO_RS00955 0.79 +1.6 203,862 + HSERO_RS00955 0.89 +1.2 203,863 - HSERO_RS00955 0.89 +0.6 203,867 + HSERO_RS00955 0.89 +2.1 203,946 - +0.1 204,030 - -0.5 204,093 - +0.2 204,211 + +0.1 204,211 + +0.6 204,211 + -0.1 204,219 - +0.8 204,229 + -0.2 204,257 - +0.3 204,314 + +0.8 204,447 + HSERO_RS00960 0.17 -0.3 204,609 - HSERO_RS00960 0.28 -1.0 204,691 + HSERO_RS00960 0.34 -1.0 204,691 + HSERO_RS00960 0.34 -0.0 204,699 - HSERO_RS00960 0.34 -0.9 204,720 - HSERO_RS00960 0.36 -0.3 204,780 + HSERO_RS00960 0.40 -0.9 204,820 - HSERO_RS00960 0.43 +0.7 204,864 + HSERO_RS00960 0.46 +0.3
Or see this region's nucleotide sequence