Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00890 and HSERO_RS00895 are separated by 15 nucleotides HSERO_RS00895 and HSERO_RS00900 are separated by 196 nucleotides HSERO_RS00900 and HSERO_RS00905 are separated by 257 nucleotides
HSERO_RS00890: HSERO_RS00890 - L-proline ABC transporter, permease component 2 <small>(from data)</small>, at 185,026 to 186,240
_RS00890
HSERO_RS00895: HSERO_RS00895 - L-proline ABC transporter, ATPase component 1 <small>(from data)</small>, at 186,256 to 187,023
_RS00895
HSERO_RS00900: HSERO_RS00900 - L-proline ABC transporter, ATPase component 2 <small>(from data)</small>, at 187,220 to 187,945
_RS00900
HSERO_RS00905: HSERO_RS00905 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 188,203 to 191,895
_RS00905
Position (kb) 187
188 Strain fitness (log2 ratio) -1
0
1 at 186.395 kb on + strand, within HSERO_RS00895 at 186.395 kb on + strand, within HSERO_RS00895 at 186.936 kb on - strand, within HSERO_RS00895 at 187.038 kb on - strand at 187.089 kb on - strand at 187.682 kb on + strand, within HSERO_RS00900 at 188.009 kb on + strand at 188.045 kb on - strand at 188.056 kb on + strand at 188.193 kb on + strand at 188.334 kb on - strand at 188.740 kb on + strand, within HSERO_RS00905 at 188.741 kb on + strand, within HSERO_RS00905 at 188.748 kb on - strand, within HSERO_RS00905 at 188.759 kb on - strand, within HSERO_RS00905
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 186,395 + HSERO_RS00895 0.18 -0.4 186,395 + HSERO_RS00895 0.18 +0.5 186,936 - HSERO_RS00895 0.89 +0.9 187,038 - +0.4 187,089 - +0.4 187,682 + HSERO_RS00900 0.64 +1.0 188,009 + +0.5 188,045 - -0.4 188,056 + +0.6 188,193 + +1.1 188,334 - -1.0 188,740 + HSERO_RS00905 0.15 -0.3 188,741 + HSERO_RS00905 0.15 -1.4 188,748 - HSERO_RS00905 0.15 +0.5 188,759 - HSERO_RS00905 0.15 -0.3
Or see this region's nucleotide sequence