Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_73

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_72 and Pf6N2E2_73 overlap by 4 nucleotidesPf6N2E2_73 and Pf6N2E2_74 overlap by 17 nucleotidesPf6N2E2_74 and Pf6N2E2_75 are separated by 89 nucleotides Pf6N2E2_72 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 114,413 to 115,333 _72 Pf6N2E2_73 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 115,330 to 116,637 _73 Pf6N2E2_74 - DedD protein, at 116,621 to 117,295 _74 Pf6N2E2_75 - Colicin V production protein, at 117,385 to 117,945 _75 Position (kb) 115 116 117Strain fitness (log2 ratio) -1 0 1at 115.329 kb on + strandat 116.642 kb on + strandat 117.144 kb on - strand, within Pf6N2E2_74at 117.144 kb on - strand, within Pf6N2E2_74at 117.153 kb on - strand, within Pf6N2E2_74at 117.374 kb on + strandat 117.637 kb on + strand, within Pf6N2E2_75

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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115,329 + +1.1
116,642 + +1.1
117,144 - Pf6N2E2_74 0.77 -0.9
117,144 - Pf6N2E2_74 0.77 +1.1
117,153 - Pf6N2E2_74 0.79 +0.5
117,374 + -1.2
117,637 + Pf6N2E2_75 0.45 -1.3

Or see this region's nucleotide sequence